PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24335_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 159aa MW: 18931 Da PI: 11.4054 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76 | 7.4e-24 | 2 | 77 | 15 | 91 |
FAR1 15 rkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkkek+gkw vt++++eHnH+l+p Cotton_A_24335_BGI-A2_v1.0 2 RVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKEKTGKWIVTRFVKEHNHQLVP 77 566778999**********************99.9****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.3E-22 | 2 | 77 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MRVDAFRRSM RDGKVVWRRL VCNKEGFRKL RPRRSENRKP RAITREGCKA MIVVKKEKTG 60 KWIVTRFVKE HNHQLVPIPV NGRRSMLLSQ TPDEKDVKIR ELTAELQRER KRSAAIQEQL 120 DMVLREMEEH SNHLSRNIDD IVQSVREIES NPVAHFKRQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017623132.1 | 1e-113 | PREDICTED: protein FAR1-RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1U8NWR6 | 1e-111 | A0A1U8NWR6_GOSHI; protein FAR1-RELATED SEQUENCE 1-like isoform X2 | ||||
STRING | Gorai.N002600.1 | 1e-106 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13524 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-77 | FAR1 family protein |