PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24225_BGI-A2_v1.0 | ||||||||
Common Name | F383_14810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 40547.5 Da PI: 8.5394 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.9 | 6.7e-52 | 8 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+ +yL kk++++++++ ++i++vdiyk++PwdLp k+ +ekewyfFs+rd+ky++g r+nra+ sgyW Cotton_A_24225_BGI-A2_v1.0 8 LPPGFRFHPTDEELILHYLMKKLSSSPFPV-SIIADVDIYKFDPWDLPDKAVFGEKEWYFFSPRDRKYPNGARPNRAAGSGYW 89 79****************************.89***************7777899**************************** PP NAM 84 katgkdkevlsk..kgel........vglkktLvfykgrapkgektdWvmheyrl 128 katg+dk ++++ + +g+kk Lvfykgr pkg kt+W+mheyrl Cotton_A_24225_BGI-A2_v1.0 90 KATGTDKIIVASsmA--AgrggvysnIGVKKALVFYKGRPPKGIKTNWIMHEYRL 142 **********98550..244556677***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-64 | 5 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.071 | 8 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-27 | 9 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MRHPHSSLPP GFRFHPTDEE LILHYLMKKL SSSPFPVSII ADVDIYKFDP WDLPDKAVFG 60 EKEWYFFSPR DRKYPNGARP NRAAGSGYWK ATGTDKIIVA SSMAAGRGGV YSNIGVKKAL 120 VFYKGRPPKG IKTNWIMHEY RLSHNPNPNS NNRSFKSKDC SMRLDDWVLC RIYNKSHALS 180 STSTATNDQN QEEDEAEQFI QDALLPALES PSSNNNSNLK LQSQKSCSFS NLLDAMDYSM 240 LSSFLADNQC NTAGYESSSF GFRNFEQASV CDTSRFPQKL PQLTSSVVPA MENKLKRPYS 300 SIDQDYLEPP KKFISSCNHT KSTAQSDMTQ SNFLNQSFFS HSLLPMPSFS IPRIEERF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-72 | 7 | 175 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-72 | 7 | 175 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-72 | 7 | 175 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-72 | 7 | 175 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022742166.1 | 0.0 | NAC transcription factor 47-like | ||||
Swissprot | Q84TD6 | 1e-113 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A0B0NEF4 | 0.0 | A0A0B0NEF4_GOSAR; NAC domain-containing 29-like protein | ||||
STRING | EOY10731 | 1e-176 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7723 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-104 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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