PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24164_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 1057aa MW: 119071 Da PI: 5.6787

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24164_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	184	1.7e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 l+ ++rwl++ ei++iL n++k+++++e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cy Cotton_A_24164_BGI-A2_v1.0 20 LEAQHRWLRPAEICEILRNYQKFHISSEPPTGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCY 102 5679***************************************************************************** PP CG-1 85 YahseenptfqrrcywlLeeelekivlvhylevk 118 Yah+een++fqrr+yw+Le++l++iv+vhylevk Cotton_A_24164_BGI-A2_v1.0 103 YAHGEENENFQRRSYWMLEQDLTHIVFVHYLEVK 136 *****************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	83.036	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.0E-82	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.8E-51	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.5E-6	467	565	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.51E-16	479	565	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.3E-6	479	552	IPR002909	IPT domain
PROSITE profile	PS50297	14.928	661	780	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.40E-11	661	778	No hit	No description
SuperFamily	SSF48403	3.58E-14	664	780	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.3E-15	664	781	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF52540	4.78E-8	879	932	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.37	881	903	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.096	882	911	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0017	883	902	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0038	904	926	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.304	905	929	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.2E-4	907	926	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1057 aa Download sequence Send to blast
MADRASYSLA PRLDIDQILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML 120 EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSTSPTSTL 180 TSLCEDADSE DGHQASSRFC TLPQQGNASV MDKIDSVFSN HCSPHQYPGW SSIPGVNEVS 240 HLHGDRPRDI DYGTCTTEAR RTPDLPSWEQ DLGQYLPVCA AASSHTSATS IQPDTMSISL 300 QQQNKMKGKL LTVESASPEF GNPLSTESNW QIPSADNALE LPKWLMDSSS NFELPYDTRF 360 FEQKTHDFQL PNALEEITSH DVLKDDDSDS VMKTYPENDI YLDGNVNYAF SLKKSLLNGE 420 ENLKKVDSFS RWITKELGEV DDLQMQSSSG LAWSTVECGN VSDDASLSPS LSQDQLFSIV 480 DFSPKWAYID LETEVLIIGT FLKSQEEVAK YNWSCMFGEV EVPAEVIADG ILSCYAPPHN 540 IGQVPFYVTC TNRVACSEVR EFDYRAGVTK DINVFDIYGL TSREMLLRLK TLLSLKSFSP 600 CNHHCQGVVE KRELIAKIIS MKEEEERHQF VDPSSDQDLS EYEEKERLLQ RLMKEKLYSW 660 LLHKIMEDGK GPNILDEKGQ GVLHLAAALG YDWAINPTVS AGVSINFRDV NGWTALHWAA 720 FCGRQGPPNL LLERTVAILV SVGAAPGALT DPSPEFPLAR TPADLASANG HKGISGFLAE 780 SSLTSYLSSL TMDDQKEAVQ TVSDRIATSV NYNDAQDILS LKDSITAVCN ATQAADRIHQ 840 MFRMQSFQWK QLRESSDAVS DEHVISLLTT KTRRPFQSDG VAHAAATQIQ KKFRGWKKRK 900 EFLLIRQRIV KIQAHVRGHQ VRKQYKTFVW SVGILEKVIL RWRRKGSGLR GFRRDAIIKP 960 DPQCTPPEED EYDFLKEGRK QTEERFQKAL TRVKSMAQNS EGRGQYRRLL TLVQGIQENK 1020 ACNMVLNSTE EVAVADEDFL DVDSLLDDDT FMSIAFE

Sequence ? help Back to Top

Protein Sequence Length: 1057 aa Download sequence Send to blast

MADRASYSLA PRLDIDQILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSTSPTSTL  180
TSLCEDADSE DGHQASSRFC TLPQQGNASV MDKIDSVFSN HCSPHQYPGW SSIPGVNEVS  240
HLHGDRPRDI DYGTCTTEAR RTPDLPSWEQ DLGQYLPVCA AASSHTSATS IQPDTMSISL  300
QQQNKMKGKL LTVESASPEF GNPLSTESNW QIPSADNALE LPKWLMDSSS NFELPYDTRF  360
FEQKTHDFQL PNALEEITSH DVLKDDDSDS VMKTYPENDI YLDGNVNYAF SLKKSLLNGE  420
ENLKKVDSFS RWITKELGEV DDLQMQSSSG LAWSTVECGN VSDDASLSPS LSQDQLFSIV  480
DFSPKWAYID LETEVLIIGT FLKSQEEVAK YNWSCMFGEV EVPAEVIADG ILSCYAPPHN  540
IGQVPFYVTC TNRVACSEVR EFDYRAGVTK DINVFDIYGL TSREMLLRLK TLLSLKSFSP  600
CNHHCQGVVE KRELIAKIIS MKEEEERHQF VDPSSDQDLS EYEEKERLLQ RLMKEKLYSW  660
LLHKIMEDGK GPNILDEKGQ GVLHLAAALG YDWAINPTVS AGVSINFRDV NGWTALHWAA  720
FCGRQGPPNL LLERTVAILV SVGAAPGALT DPSPEFPLAR TPADLASANG HKGISGFLAE  780
SSLTSYLSSL TMDDQKEAVQ TVSDRIATSV NYNDAQDILS LKDSITAVCN ATQAADRIHQ  840
MFRMQSFQWK QLRESSDAVS DEHVISLLTT KTRRPFQSDG VAHAAATQIQ KKFRGWKKRK  900
EFLLIRQRIV KIQAHVRGHQ VRKQYKTFVW SVGILEKVIL RWRRKGSGLR GFRRDAIIKP  960
DPQCTPPEED EYDFLKEGRK QTEERFQKAL TRVKSMAQNS EGRGQYRRLL TLVQGIQENK  1020
ACNMVLNSTE EVAVADEDFL DVDSLLDDDT FMSIAFE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN558810	6e-75	JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016667194.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X3
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A1U8HV09	0.0	A0A1U8HV09_GOSHI; calmodulin-binding transcription activator 2-like isoform X3
STRING	Gorai.005G220600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4082	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]