PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24144_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 486aa MW: 50969.9 Da PI: 7.9439

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24144_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.6	1.5e-40	124	229	2	113
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 +++k++++++hTkv+gR+RR+R++a c ar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s Cotton_A_24144_BGI-A2_v1.0 124 PPAKRSTKDRHTKVDGRGRRIRMPAACTARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGS 206 5789*****************************************************************99988888888888 PP TCP 84 nsssgkaaksaakskksqksaasalnlake 113 + s++ +sk++++s + al+la + Cotton_A_24144_BGI-A2_v1.0 207 TLSAP-------PSKSAPHSFHGALALASH 229 55544.......223333333333333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-37	129	233	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.59	130	184	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MELTYSQNNK QTNNNTNLVS SDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS 60 STATVITTAT PPLSSSSSSP STTKTNPAQP VDASLAIATR SSASLNIDDS TKKNQPNLPP 120 SSNPPAKRST KDRHTKVDGR GRRIRMPAAC TARVFQLTRE LGHKSDGETI EWLLQQAEPA 180 IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPHSF HGALALASHH HPYEEGFAHS 240 ALFGLHHQQQ QLLRADQIAE TLPAGGGGSG GCGNSSENYM RKRFREDLFK DDNQQQGETG 300 GGGGSGDGDS GGDGSSIKAF KTGLPQLHKP SNILPATAMW AVAPAPSSTT GSTFWMLPVT 360 TTGPSILTAA SGAGSSEPQM WPFGTASGNT LQAPLHFVPR FNLQGNLESQ GGRASPLQLG 420 SMLLQQQHQP SQHLGLGLSE SNLGMLAALN AYSRGGPNIN SDQNNPMEHH QQQGTNSGDE 480 DPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MELTYSQNNK QTNNNTNLVS SDGTTTTSSA PSSTSNNNNS PFNITSISHL HRRLLHPTTS  60
STATVITTAT PPLSSSSSSP STTKTNPAQP VDASLAIATR SSASLNIDDS TKKNQPNLPP  120
SSNPPAKRST KDRHTKVDGR GRRIRMPAAC TARVFQLTRE LGHKSDGETI EWLLQQAEPA  180
IIAATGTGTI PANFSTLNVS LRSSGSTLSA PPSKSAPHSF HGALALASHH HPYEEGFAHS  240
ALFGLHHQQQ QLLRADQIAE TLPAGGGGSG GCGNSSENYM RKRFREDLFK DDNQQQGETG  300
GGGGSGDGDS GGDGSSIKAF KTGLPQLHKP SNILPATAMW AVAPAPSSTT GSTFWMLPVT  360
TTGPSILTAA SGAGSSEPQM WPFGTASGNT LQAPLHFVPR FNLQGNLESQ GGRASPLQLG  420
SMLLQQQHQP SQHLGLGLSE SNLGMLAALN AYSRGGPNIN SDQNNPMEHH QQQGTNSGDE  480
DPNNSQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632285.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	1e-86	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A0D2S429	0.0	A0A0D2S429_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8MPN6	0.0	A0A1U8MPN6_GOSHI; transcription factor TCP8-like
STRING	Gorai.012G166500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-78	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]