PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24047_BGI-A2_v1.0 | ||||||||
Common Name | F383_02589 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 76393.3 Da PI: 7.5254 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.2 | 3.1e-23 | 108 | 209 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L + Cotton_A_24047_BGI-A2_v1.0 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVA 188 89****************************996555555..89**************************************** PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD++vF + +++ l+++++r+ Cotton_A_24047_BGI-A2_v1.0 189 GDSIVFL--RAENGDLCIGIRRA 209 *******..4488889****996 PP | |||||||
2 | Auxin_resp | 113.1 | 2.6e-37 | 278 | 360 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ as+++ FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+ Cotton_A_24047_BGI-A2_v1.0 278 ATLASNGQQFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPLHWPDSPWRLLQ 360 67899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.8E-37 | 101 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.05E-29 | 102 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.51E-21 | 107 | 208 | No hit | No description |
Pfam | PF02362 | 1.9E-21 | 108 | 209 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-21 | 108 | 210 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 108 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-32 | 278 | 360 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.154 | 602 | 682 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MEKCLDSQLW HACAGGMVQM PSVNTKVFYF PQGHSEHACG TVDFRNCPRI QAYILCRVAA 60 VKFMADPETD EVFAKIRLIP VNTNDPDFED DGIGSINGNE TQEKPASFAK TLTQSDANNG 120 GGFSVPRYCA ETIFPRLDYS ADPPVQTILA KDVHGETWKF RHIYRGTPRR HLLTTGWSTF 180 VNHKKLVAGD SIVFLRAENG DLCIGIRRAK RGIGGGPESS TGWNATAGNC MIPYGGFSAF 240 LREDEGKLMR NGSGNGVSSN GNLMGKRKVR PEQVIETATL ASNGQQFEVV YYPRASTPEF 300 CVKASLVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI SSVQVADPLH WPDSPWRLLQ 360 VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK LRLPQHSDFH LDGQLPMPTF 420 SGNLLGASNP FGCLPNTAPA GMQGARHAHY GLSLSDLHLN KLQSGLFPAS FPPLDYAPVL 480 NRTSNGGPNI RKPSMSENVS CVLTMSHPSQ NSKKADGAKT PQLVLFGRPI LTEQQISLSC 540 SGDTSSPVLT GNSSSEYLDK AANFSDGSGS ALHQQGLPER ASCEGLPWYK NNRQEAEPNL 600 ETGHCKVFMQ SEDVGRTLNL SLLGSYDELQ RKLADMFGIE NSETLSHLLY RDATGAVKQI 660 GEEPFSDFMK TARRLTILTD SSSDNVGEYR GRSKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-81 | 5 | 381 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017607708.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0B0NXT5 | 0.0 | A0A0B0NXT5_GOSAR; Auxin response factor | ||||
STRING | Gorai.006G166400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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