PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24047_BGI-A2_v1.0
Common NameF383_02589
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 695aa    MW: 76393.3 Da    PI: 7.5254
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24047_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23108209199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +
  Cotton_A_24047_BGI-A2_v1.0 108 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVA 188
                                 89****************************996555555..89**************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD++vF   + +++ l+++++r+
  Cotton_A_24047_BGI-A2_v1.0 189 GDSIVFL--RAENGDLCIGIRRA 209
                                 *******..4488889****996 PP

2Auxin_resp113.12.6e-37278360283
                  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                 a+ as+++ FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
  Cotton_A_24047_BGI-A2_v1.0 278 ATLASNGQQFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPLHWPDSPWRLLQ 360
                                 67899****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-37101212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-29102211IPR015300DNA-binding pseudobarrel domain
CDDcd100176.51E-21107208No hitNo description
PfamPF023621.9E-21108209IPR003340B3 DNA binding domain
SMARTSM010195.7E-21108210IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028108210IPR003340B3 DNA binding domain
PfamPF065072.0E-32278360IPR010525Auxin response factor
PROSITE profilePS5174521.154602682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MEKCLDSQLW HACAGGMVQM PSVNTKVFYF PQGHSEHACG TVDFRNCPRI QAYILCRVAA  60
VKFMADPETD EVFAKIRLIP VNTNDPDFED DGIGSINGNE TQEKPASFAK TLTQSDANNG  120
GGFSVPRYCA ETIFPRLDYS ADPPVQTILA KDVHGETWKF RHIYRGTPRR HLLTTGWSTF  180
VNHKKLVAGD SIVFLRAENG DLCIGIRRAK RGIGGGPESS TGWNATAGNC MIPYGGFSAF  240
LREDEGKLMR NGSGNGVSSN GNLMGKRKVR PEQVIETATL ASNGQQFEVV YYPRASTPEF  300
CVKASLVKAA LQIRWCSGMR FKMAFETEDS SRISWFMGTI SSVQVADPLH WPDSPWRLLQ  360
VTWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LSPFSPPRKK LRLPQHSDFH LDGQLPMPTF  420
SGNLLGASNP FGCLPNTAPA GMQGARHAHY GLSLSDLHLN KLQSGLFPAS FPPLDYAPVL  480
NRTSNGGPNI RKPSMSENVS CVLTMSHPSQ NSKKADGAKT PQLVLFGRPI LTEQQISLSC  540
SGDTSSPVLT GNSSSEYLDK AANFSDGSGS ALHQQGLPER ASCEGLPWYK NNRQEAEPNL  600
ETGHCKVFMQ SEDVGRTLNL SLLGSYDELQ RKLADMFGIE NSETLSHLLY RDATGAVKQI  660
GEEPFSDFMK TARRLTILTD SSSDNVGEYR GRSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-81538151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607708.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0B0NXT50.0A0A0B0NXT5_GOSAR; Auxin response factor
STRINGGorai.006G166400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]