PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_23932_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 343aa MW: 38799.9 Da PI: 7.6201

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_23932_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.2	2.3e-10	62	102	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 +k +rr+++NReAAr+sR RKka++++Le k ++Le+ Cotton_A_23932_BGI-A2_v1.0 62 TDKIQRRLAQNREAARKSRMRKKAYVQQLESsrlKLAQLEQ 102 7899**************************83333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.2E-9	57	109	No hit	No description
SMART	SM00338	9.0E-9	60	142	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.6E-7	62	100	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.22	62	106	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.09E-7	64	105	No hit	No description
PROSITE pattern	PS00036	0	67	82	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.2E-28	151	225	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MAIYEQFHHI SRWADTFNSD NSPNIGSSTI VPADVRLKNK AECIPCEQVE PSISDQETNK 60 PTDKIQRRLA QNREAARKSR MRKKAYVQQL ESSRLKLAQL EQELERARQQ GIHIAGASDA 120 GYFGLSGTVN SGITSFEMEY RHWVEEQNRL ICELRTAVQA HVTDIELRIL VESGLNHYYN 180 LFRMKADAAK ADVFYLISGI WRTSAERFFH WIGGFRPSAL LNVVVPQIEP LTDQQHLEVC 240 NLRQSSQQAE DALSQGVEKL QQSLAESVAS DLCSGNYRAQ MVAAIDKLEA LENFVSQADH 300 LRQQTLQQMA RILTARQAAR GLLAMGEYFH RLRALSSLSA ARP

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MAIYEQFHHI SRWADTFNSD NSPNIGSSTI VPADVRLKNK AECIPCEQVE PSISDQETNK  60
PTDKIQRRLA QNREAARKSR MRKKAYVQQL ESSRLKLAQL EQELERARQQ GIHIAGASDA  120
GYFGLSGTVN SGITSFEMEY RHWVEEQNRL ICELRTAVQA HVTDIELRIL VESGLNHYYN  180
LFRMKADAAK ADVFYLISGI WRTSAERFFH WIGGFRPSAL LNVVVPQIEP LTDQQHLEVC  240
NLRQSSQQAE DALSQGVEKL QQSLAESVAS DLCSGNYRAQ MVAAIDKLEA LENFVSQADH  300
LRQQTLQQMA RILTARQAAR GLLAMGEYFH RLRALSSLSA ARP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243092	1e-127	AC243092.1 Gossypioides kirkii clone GKH058K14-jmr, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612699.1	0.0	PREDICTED: transcription factor TGA3
Swissprot	Q93ZE2	1e-155	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2P5W9L7	0.0	A0A2P5W9L7_GOSBA; Uncharacterized protein
STRING	Gorai.002G219800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-137	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]