PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_23920_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 25250.1 Da PI: 4.5573 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.3 | 2.2e-17 | 3 | 97 | 2 | 99 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgy 82 GfrF+Ptdee++ e L +kv+g++ +e++++i + +iy++eP++L+ + ++ +++e y++++r++ + + ++ +g Cotton_A_23920_BGI-A2_v1.0 3 LTGFRFSPTDEEII-EILSQKVSGNTsMEAFDFIIQKNIYDFEPQELHgSerTIGLNKNERYYYCRRESDS------REVMGKGW 80 57************.88****999997899999**************8424455568889******98753......448899** PP NAM 83 Wkatgkdkevlskkgel 99 Wkat + k+v s +ge+ Cotton_A_23920_BGI-A2_v1.0 81 WKATSHLKAVSSPNGEE 97 **********9986665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 15.563 | 2 | 137 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-16 | 3 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-8 | 4 | 91 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MVLTGFRFSP TDEEIIEILS QKVSGNTSME AFDFIIQKNI YDFEPQELHG SERTIGLNKN 60 ERYYYCRRES DSREVMGKGW WKATSHLKAV SSPNGEEWRL CKIKYKGKEK VEEDMTPTEK 120 TFRHSTNKTL LTSFEAKDCS SGSSNSIAPM QLELAFEQPP LTQPILPVNN DINYYYDNYC 180 WSNSNMMLYE DHQLADQLDT LSEQPFSDLW SWDDYH |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX586241 | 2e-58 | JX586241.1 Gossypium hirsutum clone NBRI_GE20018 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017632835.1 | 1e-160 | PREDICTED: uncharacterized protein LOC108475386 | ||||
TrEMBL | A0A2P5XL83 | 1e-149 | A0A2P5XL83_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G020600.1 | 1e-139 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16224 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 5e-11 | NAC domain containing protein 94 |