PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_23892_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 310aa MW: 36564.2 Da PI: 7.0571

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_23892_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.3	8.7e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratks 80 +ppGfrFhPt+eelv++yL+kk+ +k++l +vik+vd+yk+ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat++ Cotton_A_23892_BGI-A2_v1.0 7 VPPGFRFHPTEEELVDYYLRKKILLRKIDL-DVIKDVDLYKIEPWDLQEicRIGReEQNEWYFFSHKDKKYPTGSRTNRATAA 88 69**************************.9***********954544432566******************** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+Wkatg+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Cotton_A_23892_BGI-A2_v1.0 89 GFWKATGRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **********.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-58	4	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.082	7	172	IPR003441	NAC domain
Pfam	PF02365	7.0E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MNVLPQVPPG FRFHPTEEEL VDYYLRKKIL LRKIDLDVIK DVDLYKIEPW DLQEICRIGR 60 EEQNEWYFFS HKDKKYPTGS RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETYEN GTPQASLLFY YYNFFSLIMC DEGWVVCRVF KKRITAMRKV 180 GEHESSYCYD DQVPFIPDLD SPNQTSLSNN AYHHLPYSCK KELDLQYQVP HDHYLQSRDP 240 LSCNPMAAFG QCSSLTQDHH IQKTHHQHLN ALFGSHSNEQ AVDQTTDWRL LDTFVASQLS 300 QEEEIYRQSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-47	6	173	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847206	1e-153	KC847206.1 Gossypium hirsutum NAC domain protein NAC29 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641180.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-115	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2P5XWG3	0.0	A0A2P5XWG3_GOSBA; Uncharacterized protein
STRING	Gorai.003G114100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24786	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-104	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]