PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23869_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 223aa    MW: 24952.4 Da    PI: 9.4227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23869_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-2178128255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka+++a+ kl+g
  Cotton_A_23869_BGI-A2_v1.0  78 HYRGVRRRP-WGKYAAEIRDP---NrKGARVWLGTFDTAIEAAKAYDEAAFKLRG 128
                                 7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3277137IPR001471AP2/ERF domain
PfamPF008473.0E-1578128IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2378137IPR016177DNA-binding domain
CDDcd000182.19E-3178136No hitNo description
PROSITE profilePS5103224.61978136IPR001471AP2/ERF domain
SMARTSM003801.7E-3778142IPR001471AP2/ERF domain
PRINTSPR003671.1E-137990IPR001471AP2/ERF domain
PRINTSPR003671.1E-13118138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTSSEETLAL ELIRKHLLTD FASMDSFLAS LHHIVETPQF SQLHSPNQMK HSTLSQRRPA  60
INVAIPAPKV NVSDEQRHYR GVRRRPWGKY AAEIRDPNRK GARVWLGTFD TAIEAAKAYD  120
EAAFKLRGSK AILNFPLEAG KSSSTHSELS KACIKRKREE EEEEGRVESK VVKREEKGSV  180
TPGVCLTPSN WTGFWDSEDM KGIFSIPPLS PLSPFGYSGL AVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2877137464ATERF1
3gcc_A2e-2877137464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5273351e-154HQ527335.1 Gossypium herbaceum clone NBRI_B_EYI1BW404JRQ87 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737467.11e-166PREDICTED: ethylene-responsive transcription factor ERF105-like
RefseqXP_017640650.11e-166PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY908e-74EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A1U8NEP51e-164A0A1U8NEP5_GOSHI; Ethylene response factor
STRINGGorai.003G112200.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.13e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]