PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_23759_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 150aa MW: 16790.2 Da PI: 9.4207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_23759_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	5.9e-06	33	72	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R d++ +++ +L++l+ + +K + a++L +A+eYI+ L Cotton_A_23759_BGI-A2_v1.0 33 KDRKDKVGERIVTLQQLVSPY-----GKTDTASVLLQAMEYIQFL 72 78999999********999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.6E-9	22	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.674	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-12	25	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0017	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.03E-5	33	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MMENKRSPCS VDHSSFTPLA SKRQKSDLSI STKDRKDKVG ERIVTLQQLV SPYGKTDTAS 60 VLLQAMEYIQ FLHEQVKVLS APYLQTSPTN NMQASIKPAQ EQEHYSLRSQ GLCLVPLSYT 120 MGVVHSNGAD IWAPIKTASP KFDKPFTQFN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649351.1	1e-109	PREDICTED: transcription factor bHLH113-like isoform X1
Refseq	XP_017649352.1	1e-110	PREDICTED: transcription factor bHLH113-like isoform X2
Refseq	XP_017649353.1	1e-110	PREDICTED: transcription factor bHLH113-like isoform X3
Swissprot	Q7XJU2	2e-59	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A1U8IHH6	1e-106	A0A1U8IHH6_GOSHI; transcription factor bHLH113-like isoform X1
TrEMBL	A0A1U8IHJ6	1e-106	A0A1U8IHJ6_GOSHI; transcription factor bHLH113-like isoform X2
STRING	Gorai.011G135700.1	1e-106	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	7e-62	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]