PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_23658_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | DBB | ||||||||
Protein Properties | Length: 230aa MW: 25478.1 Da PI: 4.6681 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.6e-08 | 11 | 54 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + r C+ +++ ++ l+C+ ++ lC +C e H+ H++ Cotton_A_23658_BGI-A2_v1.0 11 QGRLCDYCNQSKALLYCRADSAKLCFSCDREVHSAnqlfskHSR 54 6789******99*********************65777777776 PP | |||||||
2 | zf-B_box | 30.9 | 5.6e-10 | 54 | 99 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 + + C+ ++ ++++fCe+ q+ +C +C e+Hk H+++p+ Cotton_A_23658_BGI-A2_v1.0 54 RSQLCDACDGSPASIFCETEQSVFCSNCDWESHKFsssslHNRRPI 99 5689*****************************8899999998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.9E-14 | 10 | 57 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.206 | 10 | 57 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 11 | 55 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-6 | 13 | 45 | No hit | No description |
PROSITE profile | PS50119 | 10.509 | 53 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-7 | 55 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.61E-5 | 57 | 99 | No hit | No description |
SMART | SM00336 | 0.19 | 58 | 99 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MTDQRRSNQK QGRLCDYCNQ SKALLYCRAD SAKLCFSCDR EVHSANQLFS KHSRSQLCDA 60 CDGSPASIFC ETEQSVFCSN CDWESHKFSS SSLHNRRPIE GFTGCPSVNE LVSIVGIEDL 120 GEKKGGDDCG YDDGWLDLLS WENPVISSFD DLLVSSDSDH GFKPTDVLPL PKNRNANCGQ 180 HKEEVLHQLR ELAKSEPILS FDNTGDLQTG TVHTSCTNDT APIPFPAYEA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016717167.1 | 1e-171 | PREDICTED: zinc finger protein CONSTANS-LIKE 13-like | ||||
Swissprot | O82256 | 8e-72 | COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A1U8LRG4 | 1e-170 | A0A1U8LRG4_GOSHI; zinc finger protein CONSTANS-LIKE 13-like | ||||
STRING | Gorai.008G008400.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8148 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.2 | 7e-69 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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