PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23642_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 337aa    MW: 36551.7 Da    PI: 6.1394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23642_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-182272256
                         AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                                ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  Cotton_A_23642_BGI-A2_v1.0 22 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDDAARALRGA 72
                                689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5082279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-292279IPR001471AP2/ERF domain
SMARTSM003804.5E-362285IPR001471AP2/ERF domain
PfamPF008472.4E-122271IPR001471AP2/ERF domain
CDDcd000181.35E-172279No hitNo description
PRINTSPR003671.1E-72334IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202379IPR016177DNA-binding domain
PRINTSPR003671.1E-74561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVIPTSADGV RGRKKSSRGH HRFVGVRQRP SGRWVAEIKD SLQKVRLWLG TFDTAEDAAR  60
AYDDAARALR GANARTNFEL PPSASKTTAN RVSLDHIEPF SFEEVCGTGN DADGFLGALK  120
AKLLDGKGLK VLSPANRAAL QPIVASNSSQ NNQNVSRESR TTTVAPQGIR NMNPVPGPLN  180
PGSSKPDLLN RDQVAANHVG VQWPQPQPGQ SQIESMASMM WSNEPSFEAE WGTQMNQVPP  240
NGFFNITTCT AAATSTWPLS GTTESTMDLS YSDQCPIGLQ MNMNGKTNMV SMPMSQFDET  300
AEGVWPSPQQ FEQCDNNGWS SANGSWDPYL YVSSVLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1420781271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4763562e-32AM476356.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X215721.29, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636605.10.0PREDICTED: uncharacterized protein LOC108478643
TrEMBLA0A1U8PN050.0A0A1U8PN05_GOSHI; uncharacterized protein LOC107959992
STRINGGorai.004G127900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11