PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_23641_BGI-A2_v1.0

Common Name

F383_18506

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 397aa MW: 43278.4 Da PI: 5.0067

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_23641_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.3	0.00032	346	385	10	54
HHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r R d+i++ + L++l+P a +K + + +L +A++Y+ksL Cotton_A_23641_BGI-A2_v1.0 346 RMRIDKIRETVSVLQSLIPGvA-----GK-DAIVVLDEAIDYLKSL 385 99****************66.....44.4599********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.175	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.15E-5	346	390	No hit	No description
SuperFamily	SSF47459	8.77E-7	346	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-6	346	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MVCQAAGQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QMGEGRGSWF PLAWQSHNMN 60 PLAAPPPLGQ QNANPLFINS GTKMVSTRGT LPVYGYHDLP HLRIGQVNEP QGWFHCSPRF 120 QQVFAPSSNT FLKEQLPANP YENLTENIVP KAGSGCPQKR FLVFDKSGGQ TTLIFSSAFG 180 TPIKCSSLGP NLPFGCNLNK EDPMATVNPN LHPGPISKDV FDDNETNVQS EMHEDTEELN 240 ALLYSDDDSD YTEDEEVTST GHSPSTMTAH CEQFEGGAEG VASSSGLTKK RKLLDGSNDY 300 TPLLMDNTSS LNHCRCSEQE DDADSCFANG QNLRSDGMHL SSGNKRMRID KIRETVSVLQ 360 SLIPGVAGKD AIVVLDEAID YLKSLKRKAE TLGLSTP

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MVCQAAGQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QMGEGRGSWF PLAWQSHNMN  60
PLAAPPPLGQ QNANPLFINS GTKMVSTRGT LPVYGYHDLP HLRIGQVNEP QGWFHCSPRF  120
QQVFAPSSNT FLKEQLPANP YENLTENIVP KAGSGCPQKR FLVFDKSGGQ TTLIFSSAFG  180
TPIKCSSLGP NLPFGCNLNK EDPMATVNPN LHPGPISKDV FDDNETNVQS EMHEDTEELN  240
ALLYSDDDSD YTEDEEVTST GHSPSTMTAH CEQFEGGAEG VASSSGLTKK RKLLDGSNDY  300
TPLLMDNTSS LNHCRCSEQE DDADSCFANG QNLRSDGMHL SSGNKRMRID KIRETVSVLQ  360
SLIPGVAGKD AIVVLDEAID YLKSLKRKAE TLGLSTP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608352.1	0.0	PREDICTED: transcription factor bHLH145-like
TrEMBL	A0A0B0MG30	0.0	A0A0B0MG30_GOSAR; Transcription factor protein
STRING	Gorai.009G279600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10530	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	7e-07	phytochrome interacting factor 3