PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23603_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 200aa    MW: 22077.8 Da    PI: 5.4409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23603_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-184089255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 ++GVr++k +++Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++++g
  Cotton_A_23603_BGI-A2_v1.0 40 IFRGVRQRK-KNKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALAFRG 89
                                59*******.7*********8...347************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-143989IPR001471AP2/ERF domain
CDDcd000181.47E-293999No hitNo description
Gene3DG3DSA:3.30.730.103.4E-304099IPR001471AP2/ERF domain
PROSITE profilePS5103221.4434097IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-214099IPR016177DNA-binding domain
SMARTSM003803.4E-3040103IPR001471AP2/ERF domain
PRINTSPR003672.5E-74152IPR001471AP2/ERF domain
PRINTSPR003672.5E-76379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAAETAETPS SSSEEVYSLA TSKPKKRAGR RIFKETRHPI FRGVRQRKKN KWVCELREPN  60
KKTRIWLGTY PTPEMAARAH DVAALAFRGK SACLNFADSV WKLPLPASMD AIDIRRAAVE  120
AAEAFRPKES EEQLGGGGTR QGSVEASSSG VEVNFVDEEA MFDMPNLLAS MAEGLLLSPP  180
RSTNPDDDDD SDIDVSLWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332540.0KR233254.1 Gossypium barbadense C-repeat binding factor 5-like protein (CBF5L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016755591.11e-146PREDICTED: dehydration-responsive element-binding protein 1D-like
RefseqXP_017644355.11e-145PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ937e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1U8PWS71e-144A0A1U8PWS7_GOSHI; dehydration-responsive element-binding protein 1D-like
STRINGGorai.003G162700.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.14e-57C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]