PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23602_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 176aa    MW: 18970.3 Da    PI: 4.8184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23602_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-161259355
                         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Cotton_A_23602_BGI-A2_v1.0 12 YRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 59
                                9***9.55.6*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.1E-271169IPR001471AP2/ERF domain
SMARTSM003803.2E-281173IPR001471AP2/ERF domain
PROSITE profilePS5103220.021167IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-181169IPR016177DNA-binding domain
PRINTSPR003677.9E-71223IPR001471AP2/ERF domain
PfamPF008475.9E-101259IPR001471AP2/ERF domain
CDDcd000189.98E-181269No hitNo description
PRINTSPR003677.9E-74969IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MASSSSSKHP MYRGIRCRSG KWVSEIREPR KTTRIWLGTY PTPEMAAAAY DVAALALKGS  60
EAVVNFPDSV ASYPIPASMS SADIRKAAAA AAAMQRGENK SSESSNLVGT VQHHVVKDEG  120
FATGEYVDED VFLNMPNLLV DMAKGLLVSP PRISLIPSDD DDDSPDNCNG ESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-13667972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2598100.0KP259810.1 Gossypium barbadense APETALA2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647301.11e-128PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0F6SA153e-97A0A0F6SA15_GOSBA; APETALA2
TrEMBLA0A1U8LN913e-97A0A1U8LN91_GOSHI; ethylene-responsive transcription factor ERF027-like
STRINGGorai.003G162600.12e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]