PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_23542_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 475aa MW: 53114.6 Da PI: 7.9911 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 5.9e-17 | 145 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cotton_A_23542_BGI-A2_v1.0 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.9 | 5.8e-14 | 237 | 287 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Cotton_A_23542_BGI-A2_v1.0 237 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 287 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-9 | 145 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 145 | 203 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-17 | 146 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-32 | 146 | 208 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.78E-11 | 146 | 201 | No hit | No description |
PROSITE profile | PS51032 | 17.701 | 146 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.26E-25 | 237 | 297 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 237 | 287 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-17 | 237 | 297 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 238 | 295 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 238 | 301 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.659 | 238 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 239 | 250 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 277 | 297 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MWDLNDSPDR SRDEESEGCS SPVDGEEGKG KRVGSVSNSS SSAVVIEDGS EEEDAAALKK 60 RNSNMIFGFS VPVETGGPAP VTRQFFPLDQ DPEMRAVPSG TAQGFPMAHW VGVKFRQSEP 120 LAVAKSVEAT NPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA 180 AARAYDRAAI KFRGVEADIN FSIEDYEEDL KQMSNLTKEE FVHVLRRQST GFPRGSSKYR 240 GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIEAARAYDK AAIKCNGKDA VTNFDPSIYD 300 NELHNGETSS CNGGDHNLDL SLGNSTSKQN NLEFGGVDKQ NAMVDQHSWG YRSKQNLQEG 360 PYGNDDTMQL LNQPQIQYSQ ASIKSIGQRN RPTDNHMFNI HPPHFSQYRI HYPSNNNNNG 420 VQIGSDLSLS TNDHHHQQWQ STGPHQFTNG AASSGFPWQI RPSKAKKNGF HSLMR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964064 | 1e-129 | JX964064.1 Gossypium hirsutum clone NBRI_TRANS-333 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618998.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like | ||||
Swissprot | P47927 | 1e-130 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0B0NYY8 | 0.0 | A0A0B0NYY8_GOSAR; Floral homeotic APETALA 2-like protein | ||||
STRING | Gorai.003G025900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2297 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-126 | AP2 family protein |