PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23512_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 349aa    MW: 38174.2 Da    PI: 7.7043
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23512_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.9e-2592136145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Cotton_A_23512_BGI-A2_v1.0  92 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 136
                                 79****************************************986 PP
2QLQ64.23.3e-223066137
                         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Cotton_A_23512_BGI-A2_v1.0 30 SPFTVSQWQELEHQALIFKYMMAGLPVPPDLVLPIQK 66
                                89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-123066IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-163165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.4983166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76292136IPR014977WRC domain
PfamPF088794.1E-2193135IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNSGGGGGGG GAESGGVGMV AMRSSSSSSS PFTVSQWQEL EHQALIFKYM MAGLPVPPDL  60
VLPIQKSFES ISHRFFHHPT MGYCSFYGKK VDPEPGRCRR TDGKKWRCSK DAYPDSKYCE  120
RHMHRGRNRS RKPVESQTMA QSLSTVTSLT VSGSTTGGGG TGTASFQSLP LHAFGGTQVT  180
ALATGQSNYH VESIPYGIPR KDYRSQGIKP DAGGHSFISE ALGSNRDTWP LMQSRVSSFP  240
QSKSDGNPIL LNDYPQLSFF SDFNSGETVK HEGQSLRPFF DEWPKTRDTW SALEDDRSNQ  300
TSFSTTQLSI SIPMASSDFS TTSSHSPHDI WDFLEPQSER RPGSVLATD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824883e-46FQ382488.1 Vitis vinifera clone SS0ABG55YD19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620202.10.0PREDICTED: growth-regulating factor 4-like
SwissprotQ6AWY62e-86GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A0B0NLB00.0A0A0B0NLB0_GOSAR; Dna double-strand break repair rad50 atpase
STRINGGorai.013G184200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-45growth-regulating factor 5