PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_23498_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24634.9 Da PI: 8.2004 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.5 | 2.1e-28 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 +C++C+vlr++C + Cvl+ + p++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg Cotton_A_23498_BGI-A2_v1.0 2 SCNGCRVLRKGCRETCVLRSSLrwiesPEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVG 84 6********************************************************************************** PP DUF260 79 vilklqqqleqlkaelall 97 ++++++++++q++++++l+ Cotton_A_23498_BGI-A2_v1.0 85 LLSSGNWHICQAAVDTVLR 103 ************9998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.324 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.5E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSCNGCRVLR KGCRETCVLR SSLRWIESPE AQGNATLFLA KFFGRSDLLS LISSVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLRGGSLRPV SEISAGVWRP 120 SCDESTDRFC GDESYHFPSR YAESNPLMRM MMMENQSASA ASDLSLSLTT TKSGNGRRAG 180 RRYEEEKKRA KTMSMYSEGS EITASESNEY EGSQERKILK LFV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749355.1 | 1e-164 | PREDICTED: LOB domain-containing protein 39-like | ||||
Refseq | XP_017605038.1 | 1e-164 | PREDICTED: LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 4e-65 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A1U8PDY2 | 1e-163 | A0A1U8PDY2_GOSHI; LOB domain-containing protein 39-like | ||||
STRING | Gorai.009G218800.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 7e-65 | LOB domain-containing protein 39 |