PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_23467_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 141aa MW: 16758.8 Da PI: 9.5729

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_23467_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.7	1e-12	56	106	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 ++ rr+ +NRe+ArrsR RK++ +e+ +++v L+ eN++Lk++l+ ++ Cotton_A_23467_BGI-A2_v1.0 56 RKKRRMKSNRESARRSRWRKRMHLENITDEVNRLSVENQQLKNRLSAVINQ 106 67889999**********************************999876665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.6E-12	52	103	No hit	No description
SMART	SM00338	3.3E-15	52	116	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.9E-11	53	103	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.909	54	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-11	56	110	No hit	No description
CDD	cd14702	5.92E-14	57	108	No hit	No description
PROSITE pattern	PS00036	0	59	74	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MFLSQEADQF QLPVNETGFT REELEELLSF LESNEPVSPN SGSEGSTRAV YSPDERKKRR 60 MKSNRESARR SRWRKRMHLE NITDEVNRLS VENQQLKNRL SAVINQYHIV WRENEQLRSK 120 SEALWAKLLD LYWTLATMQS R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	61	KKRRMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605938.1	6e-99	PREDICTED: bZIP transcription factor 2-like
TrEMBL	A0A0D2URX3	7e-97	A0A0D2URX3_GOSRA; Uncharacterized protein
STRING	Gorai.009G221800.1	1e-97	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12232	24	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59530.1	4e-15	basic leucine-zipper 4