PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23464_BGI-A2_v1.0
Common NameF383_00237
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 613aa    MW: 65713.7 Da    PI: 7.6763
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23464_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.8e-24233277145
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Cotton_A_23464_BGI-A2_v1.0 233 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 277
                                 79****************************************985 PP
2QLQ61.13e-21163199137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 ++FT++Q+++L++Q+l+yKy+ +n+P+P++Ll +i+k
  Cotton_A_23464_BGI-A2_v1.0 163 GPFTPSQWMELEHQALIYKYITSNVPIPSNLLIPIRK 199
                                 59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-12163199IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.3E-15164198IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.641164199IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663233277IPR014977WRC domain
PfamPF088797.3E-21234276IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MDFGVVGLEG FVGSDTATTT TTTTTTTTAG FTSLAADPEA KQKWYGSGFL KQERSGNNED  60
DWRSSKLAKF DDFSTSKAAL LNHRNTLLRS NSSIFSDGQH QQQQMLSFSA PKSEALSVDT  120
ASQSVAFPYF QLTSPAYTRN TGYNTGGFNG ANMHGGVLAG GRGPFTPSQW MELEHQALIY  180
KYITSNVPIP SNLLIPIRKS LDSANFSLFS GGLLRPNTLG WGAFHLGFSN NTDPEPGRCR  240
RTDGKKWRCS RDAVADQKYC ERHMNRGRHR SRKPVEGQSG HSAAAIATTE LMPTVSSSAS  300
VVGPTGGSGE SNSLAIAQQQ FKHSQPATAS NLSAAATLNR LLLSKDTVGD TAPGLTMTSL  360
IGDLKSKENP FLIPKQQSSY EHHSRTEFGV VSSDSLLNPS HKSSALIKCR NFTSQETESQ  420
HSLRQFMDEC SKTQSDRSAI SWPEIDVQSD RTQLSISVPM AASDYISFTS STNNDKVTLS  480
PLRLSREFDP IHMGLGVGSV INDSNQRQAN WIPISWEASL GGPLGEVLHS TNSSTGECKS  540
SSALNLMTEG WDSSPRLGSS PTGVLQKTSL GSLSNSSAGS SPTAEHNKTH EGASLCNNLL  600
GSALVQSSSL PAS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5888906e-86JX588890.1 Gossypium hirsutum clone NBRI_GE23454 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607398.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A0B0NK160.0A0A0B0NK16_GOSAR; Uncharacterized protein
STRINGGorai.009G222200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-115growth-regulating factor 1