PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23397_BGI-A2_v1.0
Common NameF383_07659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 685aa    MW: 75643 Da    PI: 6.7857
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23397_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.6e-23121222199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +
  Cotton_A_23397_BGI-A2_v1.0 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVA 201
                                 89****************************985444444..8999************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD++vF +   +++ l+v+++r+
  Cotton_A_23397_BGI-A2_v1.0 202 GDSIVFLR--ADNGDLCVGIRRA 222
                                 *******3..477888****996 PP

2Auxin_resp112.54.1e-37281364183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                                 aa+ a+++++FevvY+Pr+st+eF+vk+++v++a+++++ +GmRfkm fetedss++++ +Gt++  + +dp+rWpnS+Wr+L
  Cotton_A_23397_BGI-A2_v1.0 281 AASHAASGQPFEVVYYPRTSTPEFCVKASSVRAAMQIQWYPGMRFKMPFETEDSSRISWfMGTISTAQVVDPIRWPNSPWRLL 363
                                 678899****************************************************************************9 PP

                  Auxin_resp  83 k 83 
                                 +
  Cotton_A_23397_BGI-A2_v1.0 364 Q 364
                                 7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-29113224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-36116224IPR015300DNA-binding pseudobarrel domain
CDDcd100178.50E-22120221No hitNo description
PfamPF023621.5E-21121222IPR003340B3 DNA binding domain
SMARTSM010196.6E-22121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183121223IPR003340B3 DNA binding domain
PfamPF065072.0E-32281364IPR010525Auxin response factor
PROSITE profilePS5174520.044599682IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MITVMDSRKE VVKNSEKCLD PQLWHACAGG MVQMPSVNSK VFYFPQGHAE HANGNVDFGN  60
LPIPSLVLCR VSAVRFMADP ETDEVYAKIM LIPLRENSFG VEDDGFDGNV GVENPEKSAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYNAEPPVQT ILAKDVHGEV WKFRHIYRGT  180
PRRHLLTTGW SNFVNHKKLV AGDSIVFLRA DNGDLCVGIR RAKRGLGGGH EFPGWNSVSG  240
TSGSQVGSYS PFLREGESKL MRKDCNGDPR GRIRADSVIE AASHAASGQP FEVVYYPRTS  300
TPEFCVKASS VRAAMQIQWY PGMRFKMPFE TEDSSRISWF MGTISTAQVV DPIRWPNSPW  360
RLLQVAWDEP DLLHNVKRVS PWLVELVTNI PAINLNPFSP PRKKMRLPQH PDISFLNQIP  420
MPSFSGNSFR SSSPMRCITD NIPGGIQGAR HEPFGLSSSD LRSNKLHSGL FPSGFHQLDR  480
TAPPTRLSGN NFCSDNANNT NISSLLTIGN PTQSFKQSND SKTPHIVLFG QLIFCEQRAS  540
QSCSGDTVGN SSSDGNTEKT AISSDGTGSV LHQNVRENSS DEGFPWCKED QKTDLGLETG  600
HCKVFMESEN VGRTLDLSVL GSYEELYGKL ANMFGIESSE MLSSVLYRDA AGSVKHTGDE  660
PFSEFMKTAR RLTILMDSSS DNLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-78138533388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649647.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0B0PKQ80.0A0A0B0PKQ8_GOSAR; Auxin response factor
STRINGGorai.011G238900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]