PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_23190_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 343aa MW: 38356.6 Da PI: 5.5355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 126 | 176 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Cotton_A_23190_BGI-A2_v1.0 126 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 176 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-12 | 127 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-21 | 127 | 184 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-30 | 127 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 127 | 184 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-38 | 127 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.51E-32 | 128 | 184 | No hit | No description |
PRINTS | PR00367 | 3.7E-10 | 128 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 150 | 166 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDTCPVPSIK YAEHRNETKL FSPLLNVRLE NQSEMKPRIV RITVTDADAT DSSSDEEHQQ 60 KRTRVSSRNR VKKFVKEITI ESSCPTEKKI VERSKTTSSL SKASRKRPAA VAEAKGKAPA 120 KAAAGKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL 180 TNFATPKQKS IQEKTSQKPL SNSDYNSDEE SHKTDPCSPI SVLRCHSLSV DEADSQSAKE 240 SREIGSEARD VVDDSCCLSG ENLSDFSYYS SLFSGDMFCS VPDFFDDDTS LHESFLKDEF 300 RDGFLSTCGD LEFGFGDFSS FQRVNDHFQD IGDLFGSDPL LAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-21 | 123 | 183 | 1 | 62 | ATERF1 |
3gcc_A | 8e-21 | 123 | 183 | 1 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017603590.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A2P5WJ74 | 0.0 | A0A2P5WJ74_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G252300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 9e-55 | cytokinin response factor 2 |