PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_23128_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 37178.4 Da PI: 5.1074 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.7 | 4.5e-53 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+ +yLk+k+eg ++el evi+ +d+yk++PwdLp k + +++ ew+fF++rd+ky++g+r+nratk+g Cotton_A_23128_BGI-A2_v1.0 6 LPPGFRFHPTDEELIGYYLKRKTEGLEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAG 87 79****************************.99**************95334445667************************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd++v++ ++++ g +ktLvfy+grap g +tdWvmheyrl Cotton_A_23128_BGI-A2_v1.0 88 YWKATGKDRNVVC-QSAVSGYRKTLVFYQGRAPLGDRTDWVMHEYRL 133 *************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-60 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.522 | 6 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MGGPSLPPGF RFHPTDEELI GYYLKRKTEG LEIELEVIPV IDLYKFDPWD LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRNVVC QSAVSGYRKT LVFYQGRAPL 120 GDRTDWVMHE YRLSDQPETS ANQGAYALCR VMKRNESKAT DTNGELRATR VKTRSINTEL 180 TSTWTCNEPL STSGDISCQT CYPNNESHYS SPITSPPHEV TQLQPFEPIS VNIDVANVWL 240 SPDLILDSSK DYPQICETAA QYFPQYEFPS TLTPRQQYEH SNFSPSTLYS NFGEIEHDVD 300 DLGLYSGHAN NMDFYDNEGM AKLVH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 5 | 157 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 5 | 157 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 5 | 157 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 5 | 157 | 16 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-52 | 5 | 157 | 19 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 5 | 157 | 16 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 5 | 157 | 16 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847212 | 0.0 | KC847212.1 Gossypium hirsutum NAC domain protein NAC35 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641249.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like isoform X1 | ||||
Swissprot | O49697 | 1e-107 | NAC71_ARATH; NAC domain-containing protein 71 | ||||
TrEMBL | A0A2P5XA26 | 0.0 | A0A2P5XA26_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G180600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2151 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 1e-109 | NAC domain containing protein 71 |
Publications ? help Back to Top | |||
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