PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23098_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 32593.7 Da    PI: 5.9793
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23098_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181562148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++lvd++++ G g+W+ +++  g++R++k+c++rw +yl
  Cotton_A_23098_BGI-A2_v1.0 15 KGPWTAEEDQKLVDYINKNGHGSWRIVPKQAGLNRCGKSCRLRWTNYL 62
                                79********************************************97 PP

2Myb_DNA-binding54.52.6e-1768111146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg++++eE+ l+++++  lG++ W++Ia++++ gRt++++k++w++
  Cotton_A_23098_BGI-A2_v1.0  68 RGKFSEEEERLIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNFWNT 111
                                 89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-25765IPR009057Homeodomain-like
PROSITE profilePS5129419.6771062IPR017930Myb domain
SuperFamilySSF466892.9E-3212109IPR009057Homeodomain-like
SMARTSM007175.0E-151464IPR001005SANT/Myb domain
PfamPF002494.6E-171562IPR001005SANT/Myb domain
CDDcd001678.85E-111762No hitNo description
PROSITE profilePS5129427.72563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2766117IPR009057Homeodomain-like
SMARTSM007171.6E-1667115IPR001005SANT/Myb domain
PfamPF002494.8E-1668111IPR001005SANT/Myb domain
CDDcd001673.36E-1270111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRSPSCADD ANVKKGPWTA EEDQKLVDYI NKNGHGSWRI VPKQAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEERLII NLHSVLGNKW SKIAAHLPGR TDNEIKNFWN TRIRRKLLNL  120
GIDPHTHKPR TDLDHLLNLS QLLCVAQLGN TMNPLDAAFK LQADAAQLAQ AQLFQNLMQI  180
MNTNKAANVE SDGFLTLQEN TNPIPQSIPN NGFIAGVVPQ TSDPWGLSSS FEQRENPVLP  240
GLVSISPESN STMENKGNNE TDSTIYEAWE KLIMEDDEAD GGSYWKEMLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640345.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9S9Z21e-77MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D2RPT20.0A0A0D2RPT2_GOSRA; Uncharacterized protein
STRINGGorai.003G183700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.17e-75myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]