PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23045_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 462aa    MW: 52794.6 Da    PI: 8.4103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23045_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12287330755
                                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 + Er+RR++i++++++Lr l+Pk +      K++  +iL+ A+eYI +Lq
  Cotton_A_23045_BGI-A2_v1.0 287 ITERNRRKKIKDGLFKLRALVPKiS------KMDITAILTDAIEYIGNLQ 330
                                 68*********************66......****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.3E-1711158IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.09E-13276341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.344280329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10283334No hitNo description
SMARTSM003531.4E-11286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-14287343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9287330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MRGFERAVEW LRSFVYSNAW DFCVVWKLGD DPSRFIEWKE CCCSGGINVK VEQDKLQHQG  60
PPLCRDVQFQ HSIRSKACEA LSHFPFTVSL YAGENRIHGE VAISSQPKWL NHANISTSLS  120
SEETMGTHVL IPVFGGLIEL FASKNIPKDQ NIIELIRTEC NALLKAETTT AESYRKANLH  180
KWYLNTLQEK DLPFSMSLST VNPRIQFIPS IGHPPFSSAS AYISQDERLK QPIGTYYGSK  240
RLGCSQNVCA QETEAGFVLD CKVNSVNDKM RTAKQPEKVN YHSKNLITER NRRKKIKDGL  300
FKLRALVPKI SKMDITAILT DAIEYIGNLQ EEEKKLRNEL KKTEEGDCGK SNAELKSTKL  360
DWLHRKNMSA IEENHVPSGI SEMAKMEVHV EVNQITKREF WIKLCYKHKR SGFAKLMEGM  420
DSLGLGVIDA NITTFNGNVL NIFKVEVRLT EWLMSMEQYE FR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636545.10.0PREDICTED: transcription factor bHLH90-like isoform X2
TrEMBLA0A0D2T1B20.0A0A0D2T1B2_GOSRA; Uncharacterized protein
STRINGGorai.008G159000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.13e-69bHLH family protein