PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22965_BGI-A2_v1.0
Common NameF383_17088
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 720aa    MW: 81363.2 Da    PI: 5.8516
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22965_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.31.3e-1203467161373
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lL+ cA+av+++d + a++lL+++++++sp gd mqRla+yf+ +L+arla+s+++ y+ + +++ts    +++l+a++l
  Cotton_A_22965_BGI-A2_v1.0 346 LRTLLTLCAQAVATDDRRSANELLKQIRQHSSPMGDGMQRLAHYFVDGLEARLAGSGTQSYNPVFTRPTS---AANVLKAYHL 425
                                 5789*********************************************************999998888...999******* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetger 164
                                 f  ++P+ k+s +  N +I++ +e++ r+HiiDf+i +G+QWp+L++ L++Rp+gpp+l+iTg++ p++g   +e++eetg+r
  Cotton_A_22965_BGI-A2_v1.0 426 FLAACPFRKLSDFFSNTTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSTRPGGPPKLKITGIDLPQPGfrPAERVEETGRR 508
                                 *********************************************************************9************* PP

                        GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247
                                 La++Ae+++vpfef++ +a++++++++e++++++gE+l+Vn++++l +llde+v +es+r++vL+l+++l P+v+++   +  
  Cotton_A_22965_BGI-A2_v1.0 509 LANYAETFKVPFEFHA-IAQKWDTIQIEDIKIESGEVLIVNCIYRLRNLLDETVVVESPRNKVLNLMRKLHPDVLILGIVNGA 590
                                 ****************.7***************************************************************** PP

                        GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                 ++++ F +rf eal +ys+lfd+le+++pre  er+ +Ere++g+e++nv+acegaer+er et+++W+ r ++aGF+++pl+
  Cotton_A_22965_BGI-A2_v1.0 591 YSAPFFITRFREALFHYSTLFDMLETNVPREIPERMLIEREIFGWEAMNVIACEGAERIERPETYKQWQVRTTRAGFRQLPLD 673
                                 *********************************************************************************** PP

                        GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 ++++k+ak  +++ + + + ++e++++l++gWk+r +++ S+W
  Cotton_A_22965_BGI-A2_v1.0 674 KEMMKTAKERVNTSYHKDFVIDEDNHWLLQGWKGRIVYAHSCW 716
                                 ***************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.56320697IPR005202Transcription factor GRAS
PfamPF035144.6E-118346716IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MDPSLQGLYS SVDRFRVNDE TLLAISSPNF NNGFKNETFA GIPPLQPAMI PINLLPSASV  60
NEPEDYDFSD VVLKYISEML MEEDMEDKTC MFKESSAALQ AAEKSFYEVL GEQYPPSLEP  120
ELKYQNHESS NELRGQSYCS CSSGDGNLLN LPCNYDLGVQ MSLNYSSQAN SSHSSGNSAG  180
SLVDGFTDSP VSTPRLPEIF GDSESVIQFR KGFEEASRFL PNRGNLFVDV ESDGLFLKEV  240
KEEAKSVVEK VENELLQDRP RGKKKPYPED VNLYNGRSNK QSSVYTESTV SPEMFDTVLL  300
NCQSLADLQK VLQHETNKNV QQNGQSKGPT GGKARAKKGK RNVVDLRTLL TLCAQAVATD  360
DRRSANELLK QIRQHSSPMG DGMQRLAHYF VDGLEARLAG SGTQSYNPVF TRPTSAANVL  420
KAYHLFLAAC PFRKLSDFFS NTTIMNLAEN AARLHIIDFG ILYGFQWPCL IRRLSTRPGG  480
PPKLKITGID LPQPGFRPAE RVEETGRRLA NYAETFKVPF EFHAIAQKWD TIQIEDIKIE  540
SGEVLIVNCI YRLRNLLDET VVVESPRNKV LNLMRKLHPD VLILGIVNGA YSAPFFITRF  600
REALFHYSTL FDMLETNVPR EIPERMLIER EIFGWEAMNV IACEGAERIE RPETYKQWQV  660
RTTRAGFRQL PLDKEMMKTA KERVNTSYHK DFVIDEDNHW LLQGWKGRIV YAHSCWVPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5035372026382Protein SCARECROW
5b3h_A3e-5035372025381Protein SCARECROW
5b3h_D3e-5035372025381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774840.0JX577484.1 Gossypium hirsutum clone NBRI_GE9321 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646434.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0B0NS760.0A0A0B0NS76_GOSAR; Scarecrow-like protein 9
STRINGGorai.010G201000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]