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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cotton_A_22910_BGI-A2_v1.0 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 149aa MW: 17200.8 Da PI: 9.8102 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 94.2 | 5.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien+snrqvt+skRrngi+KKA+E+ +LCda+v++iif+s+gk++ey+s
Cotton_A_22910_BGI-A2_v1.0 9 KRIENSSNRQVTYSKRRNGIMKKAKEITILCDAKVSLIIFGSSGKMHEYCS 59
79***********************************************96 PP
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| 2 | K-box | 67.3 | 5.1e-23 | 65 | 130 | 5 | 70 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70
s +sl++++ ++l++e++++kke++n+q e+Rhl+Ged++sL +keL+ +e++Le++l+ +R k++
Cotton_A_22910_BGI-A2_v1.0 65 SFSSLKTKTLQNLSNEIDRIKKENDNMQIELRHLKGEDITSLPYKELMAIEDALENGLTYVRGKQD 130
455689999******************************************************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.62E-37 | 2 | 64 | No hit | No description |
| SuperFamily | SSF55455 | 1.83E-31 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.7E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.4E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.7E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.7E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.7E-15 | 71 | 131 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 10.789 | 74 | 149 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 149 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEITILCD AKVSLIIFGS SGKMHEYCSP 60 STKDSFSSLK TKTLQNLSNE IDRIKKENDN MQIELRHLKG EDITSLPYKE LMAIEDALEN 120 GLTYVRGKQD SRFCLNYLHN STLFFLQHH |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6byy_A | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6byy_B | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6byy_C | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6byy_D | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6bz1_A | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6bz1_B | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6bz1_C | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| 6bz1_D | 1e-17 | 1 | 59 | 1 | 59 | MEF2 CHIMERA |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KC155645 | 1e-100 | KC155645.1 Gossypium hirsutum MADS box protein MADS50 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001314245.1 | 4e-77 | floral homeotic protein PMADS 2-like | ||||
| Refseq | XP_012467961.1 | 4e-77 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
| Refseq | XP_017622649.1 | 4e-77 | PREDICTED: floral homeotic protein PMADS 2-like | ||||
| Swissprot | Q0HA25 | 5e-66 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
| TrEMBL | A0A1U8LW20 | 1e-75 | A0A1U8LW20_GOSHI; floral homeotic protein PMADS 2-like | ||||
| TrEMBL | U5L2X2 | 1e-75 | U5L2X2_GOSHI; MADS box protein MADS50 | ||||
| STRING | Gorai.002G223100.1 | 3e-72 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5300 | 27 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G20240.1 | 5e-58 | MIKC_MADS family protein | ||||
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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