PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22902_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 32111.2 Da PI: 9.1554

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22902_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.9e-18	159	213	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Cotton_A_22902_BGI-A2_v1.0 159 RKKLRLSKEQSAFLEESFKEHNNLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 213 788899***********************************************98 PP
2	HD-ZIP_I/II	127.4	6.2e-41	159	248	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke Cotton_A_22902_BGI-A2_v1.0 159 RKKLRLSKEQSAFLEESFKEHNNLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCETLTEENRRLHKE 241 69******************************************************************************* PP HD-ZIP_I/II 84 veeLreel 91 v+eLr +l Cotton_A_22902_BGI-A2_v1.0 242 VQELR-AL 248 **9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	143	209	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	155	215	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.29E-18	156	224	IPR009057	Homeodomain-like
SMART	SM00389	4.4E-16	157	219	IPR001356	Homeobox domain
CDD	cd00086	1.00E-15	159	216	No hit	No description
Pfam	PF00046	2.6E-15	159	213	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	190	213	IPR017970	Homeobox, conserved site
Pfam	PF02183	8.6E-11	215	249	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	9.1E-25	215	258	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MELGLSLGGS SKPFSFLEKT PKLSSNDHLG FCMGLGRSQE KRDSLEAERR GNGGDSKRVS 60 SDPHLQLHLR LPWLFDNLHE TGLSKGRGRG LDVNRLPMVA LAGEATAGHS SPDRAVSSCQ 120 LDFWFRKGNS RGKRDMDAET ERGSSRASDD DEDENGSSRK KLRLSKEQSA FLEESFKEHN 180 NLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTELD CEYLKRCCET LTEENRRLHK 240 EVQELRALKT CQPFYMQLPA TTLTMCPSCE RVTTTSATDA KIGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	163	SRKKLRL
2	207	215	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622093.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT14-like
Swissprot	P46665	3e-98	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A0D2QAH5	0.0	A0A0D2QAH5_GOSRA; Uncharacterized protein
STRING	Gorai.002G223900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4928	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-87	homeobox from Arabidopsis thaliana