PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22700_BGI-A2_v1.0
Common NameF383_30429
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 245aa    MW: 27946 Da    PI: 10.0417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22700_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.73.9e-35141391128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgy 82 
                                 +p G+rF+Ptdeelvv+yLk+k+ + +l++ +vi+e+d+++++Pw+Lp  v   +++ yfFs+r  +++++k+++r ++ sgy
  Cotton_A_22700_BGI-A2_v1.0  14 MPIGYRFRPTDEELVVHYLKRKALNLPLPA-SVIPEFDVFQTDPWSLPGDV---KEKRYFFSNRYGNESNNKKRKRvVAGSGY 92 
                                 699***************************.99***************554...4578*******999999999997888*** PP

                         NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wk  gk+k++l++ ++++vg+++ L+f + +  + +k +W++h++rl
  Cotton_A_22700_BGI-A2_v1.0  93 WKPIGKEKTILASgTNQVVGMRQALIFCERKPWTDTKPRWLLHQFRL 139
                                 ***********9967788**********9999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-4210164IPR003441NAC domain
PROSITE profilePS5100541.6714165IPR003441NAC domain
PfamPF023651.2E-1915139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGQRFVVNG GIKMPIGYRF RPTDEELVVH YLKRKALNLP LPASVIPEFD VFQTDPWSLP  60
GDVKEKRYFF SNRYGNESNN KKRKRVVAGS GYWKPIGKEK TILASGTNQV VGMRQALIFC  120
ERKPWTDTKP RWLLHQFRLV GSADETQMTK REWHGDWVVF KVIQRKRNAK KHGVICSNSQ  180
TTRAAAYMPS CIDFTGEDSS VFGPPQPTSP SSSEITEVSP NGLLDQEESS VAVITTFLHY  240
CMRKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-291217115171NO APICAL MERISTEM PROTEIN
1ut4_B3e-291217115171NO APICAL MERISTEM PROTEIN
1ut7_A3e-291217115171NO APICAL MERISTEM PROTEIN
1ut7_B3e-291217115171NO APICAL MERISTEM PROTEIN
4dul_A3e-291217115171NAC domain-containing protein 19
4dul_B3e-291217115171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893851e-41JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636795.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A0B0PH130.0A0A0B0PH13_GOSAR; NAC domain-containing 68
STRINGGorai.001G274500.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-47NAC domain containing protein 83