PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22674_BGI-A2_v1.0 | ||||||||
Common Name | F383_19282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 642aa MW: 69916 Da PI: 7.4822 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 443 | 480 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + Cotton_A_22674_BGI-A2_v1.0 443 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 480 554459******************************88 PP | |||||||
2 | BELL | 107.1 | 1.1e-34 | 312 | 380 | 4 | 72 |
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e ++kk++L+s+l+eV++ Ykqy++q+q+v++sFe vaglg+a+pY++lAlka+S+hFrcLk+ai++q+ Cotton_A_22674_BGI-A2_v1.0 312 ESRRKKSRLISMLDEVYRSYKQYYQQIQAVVASFEYVAGLGNAAPYANLALKAMSKHFRCLKNAITDQL 380 7899**************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.2E-53 | 247 | 378 | IPR006563 | POX domain |
Pfam | PF07526 | 2.8E-39 | 252 | 377 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.098 | 421 | 484 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-10 | 424 | 488 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.33E-13 | 424 | 485 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 426 | 490 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 427 | 488 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-18 | 441 | 480 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048457 | Biological Process | floral whorl morphogenesis | ||||
GO:0048645 | Biological Process | organ formation | ||||
GO:0080006 | Biological Process | internode patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MAEGFEPYHV PQQSRRDKLR IVAQNHSACV ESTAVTLSGC SGLLPLYEAS LLSSDLLTCA 60 ANASASHDFH HHQANQLSAS ASGKNSSLVC GVKGVNSMGF VGGVVNGSSS ASHHHPYLDG 120 QSSLPVNPSS IHDMNNSPFL YTPQNLQTIR DFDQSYNSGG EVVVYKPEPL SLNHESSATA 180 QALSLSLSSH NTHQNNLPLE LNLQRYGSAI YSDKVTDSGY VVPSIIRGSA STSNEVSRGS 240 LPLGPFTGYA SILKGSRFLR PAQMLLEELC DVGRGLYAEK MTPDSSLMDP SLQNLSGTGI 300 IDDSLSGGDG GESRRKKSRL ISMLDEVYRS YKQYYQQIQA VVASFEYVAG LGNAAPYANL 360 ALKAMSKHFR CLKNAITDQL QFINKPHGQT SPGKDEGPMF GNTERSLYNR AVHNAGFHEH 420 QPVWRPQRGL PERAVTVLRA WLFEHFLHPY PTDTDKLMLA KQTGLSRSQV SNWFINARVR 480 LWKPMVEEIH MLEQAQKNSQ KEARNPNKPS DHLSSANSIA PENPSTSFQR AQDTPSKRTR 540 SEPLSDIPLG SEPHNLTYNS LSSHPHVGMG VSMAGGSNGV SLTLGLHQNN GISLSEPFPF 600 NAAQRFGLGL SSEGYVIGGY ESQNRHFGRD VMGGQLLHDF VG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 430 | 487 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 430 | 487 | 1 | 58 | Homeobox protein Meis1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017612794.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 9 | ||||
Swissprot | Q9LZM8 | 1e-121 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A0B0MEP5 | 0.0 | A0A0B0MEP5_GOSAR; BEL1-like homeodomain protein 9 | ||||
STRING | Gorai.012G108300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5688 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 1e-121 | TALE family protein |