PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22543_BGI-A2_v1.0
Common NameF383_09631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 677aa    MW: 76121.9 Da    PI: 8.0047
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22543_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.93e-21130231198
                                 EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                 f k+ltpsd  ++g +++pk++a++         +  +  +++l  +d++g  W +++ +r++++r +lt+GW+ Fv +++L 
  Cotton_A_22543_BGI-A2_v1.0 130 FSKKLTPSDIKTHGGFSIPKRHANDGclplldmsQ--EIPQQELLATDLHGHPWYFRHVFRGYPKRNLLTTGWSTFVTSKKLA 210
                                 88*********************777*****9643..444569**************************************** PP

                                 TT-EEEEEE-SSSEE..EEEEE- CS
                          B3  76 egDfvvFkldgrsefelvvkvfr 98 
                                 +gD+++F +   +++e+ v+v++
  Cotton_A_22543_BGI-A2_v1.0 211 AGDSFIFLR--GENGEFGVGVRQ 231
                                 ********4..367777888876 PP

2Auxin_resp93.53.3e-31258340183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                 a ha++t+s+F+v+Y+P++ +seF+ +++++ ka++  ++ G+R +m++e+ +s e+r  Gt++g++dldp+rW+nSkWr++k
  Cotton_A_22543_BGI-A2_v1.0 258 AFHAFATRSIFNVYYRPWTRSSEFITPLDQYIKAVQFDYCFGTRCRMRVEGGESGEQRSLGTIIGTEDLDPIRWQNSKWRCVK 340
                                 6799*****************************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-31123233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-26124231IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-17128230No hitNo description
PfamPF023622.4E-18130230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252130233IPR003340B3 DNA binding domain
SMARTSM010192.1E-12130233IPR003340B3 DNA binding domain
PfamPF065071.8E-27258340IPR010525Auxin response factor
SuperFamilySSF542771.86E-8576656No hitNo description
PROSITE profilePS5174520.053578663IPR000270PB1 domain
PfamPF023095.8E-7618667IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MDGEGHGSKA KFPFHSTRGE NNDLYSKLWH ACAGPSVYVP RSGDKVLYFP QGHMEQVEAY  60
MSEDGTMEMP IYNLPWKILC RVLHVELKVE PDTDEIFAEI ILLPEAEQDE QSMEHRYYRA  120
SPRENYSRYF SKKLTPSDIK THGGFSIPKR HANDGCLPLL DMSQEIPQQE LLATDLHGHP  180
WYFRHVFRGY PKRNLLTTGW STFVTSKKLA AGDSFIFLRG ENGEFGVGVR QSMTKLLNSP  240
SPSIISAHSV RHGILASAFH AFATRSIFNV YYRPWTRSSE FITPLDQYIK AVQFDYCFGT  300
RCRMRVEGGE SGEQRSLGTI IGTEDLDPIR WQNSKWRCVK VKWDPAASSV LLPERVCPWS  360
IDLTEFTKKK KTSTLHHQKR ARPNNASSPE FSSLLMDGMF HGTAKNQSQS SSGVLQGQED  420
SDTCVNQSSV LRQSLPHLLP QDPGCASMQQ QMHKQLQIQI PTCDTFYQCS SSTAHFSGRK  480
VPGLCNGLSA FSSNRVHDDA RATKNGTSLS RPNGSHRCMV FGVNLFNGSP ELPSPQVLTS  540
SEVQRLCSTP LTSQSSVSIA SKGISSKQCN NCCSIGDQTC TKVLKYGTNL GRSVDLYRFN  600
GYKGLILELD HMFDFNGKLI DGSSGWHITY TDEDGDMMLI GDPYPWQKFQ HEVRRMVIHP  660
KEEINRLNPS SPSSASY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1192136216353Auxin response factor 1
4ldw_A1e-1192136216353Auxin response factor 1
4ldw_B1e-1192136216353Auxin response factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5894777e-58JX589477.1 Gossypium hirsutum clone NBRI_GE24193 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605141.10.0PREDICTED: auxin response factor 24-like isoform X1
TrEMBLA0A0B0Q0800.0A0A0B0Q080_GOSAR; Auxin response factor
STRINGGorai.004G085400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-134auxin response factor 2