PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22543_BGI-A2_v1.0 | ||||||||
Common Name | F383_09631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 677aa MW: 76121.9 Da PI: 8.0047 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.9 | 3e-21 | 130 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 f k+ltpsd ++g +++pk++a++ + + +++l +d++g W +++ +r++++r +lt+GW+ Fv +++L Cotton_A_22543_BGI-A2_v1.0 130 FSKKLTPSDIKTHGGFSIPKRHANDGclplldmsQ--EIPQQELLATDLHGHPWYFRHVFRGYPKRNLLTTGWSTFVTSKKLA 210 88*********************777*****9643..444569**************************************** PP TT-EEEEEE-SSSEE..EEEEE- CS B3 76 egDfvvFkldgrsefelvvkvfr 98 +gD+++F + +++e+ v+v++ Cotton_A_22543_BGI-A2_v1.0 211 AGDSFIFLR--GENGEFGVGVRQ 231 ********4..367777888876 PP | |||||||
2 | Auxin_resp | 93.5 | 3.3e-31 | 258 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++t+s+F+v+Y+P++ +seF+ +++++ ka++ ++ G+R +m++e+ +s e+r Gt++g++dldp+rW+nSkWr++k Cotton_A_22543_BGI-A2_v1.0 258 AFHAFATRSIFNVYYRPWTRSSEFITPLDQYIKAVQFDYCFGTRCRMRVEGGESGEQRSLGTIIGTEDLDPIRWQNSKWRCVK 340 6799*****************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-31 | 123 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-26 | 124 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.35E-17 | 128 | 230 | No hit | No description |
Pfam | PF02362 | 2.4E-18 | 130 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.252 | 130 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-12 | 130 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-27 | 258 | 340 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.86E-8 | 576 | 656 | No hit | No description |
PROSITE profile | PS51745 | 20.053 | 578 | 663 | IPR000270 | PB1 domain |
Pfam | PF02309 | 5.8E-7 | 618 | 667 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MDGEGHGSKA KFPFHSTRGE NNDLYSKLWH ACAGPSVYVP RSGDKVLYFP QGHMEQVEAY 60 MSEDGTMEMP IYNLPWKILC RVLHVELKVE PDTDEIFAEI ILLPEAEQDE QSMEHRYYRA 120 SPRENYSRYF SKKLTPSDIK THGGFSIPKR HANDGCLPLL DMSQEIPQQE LLATDLHGHP 180 WYFRHVFRGY PKRNLLTTGW STFVTSKKLA AGDSFIFLRG ENGEFGVGVR QSMTKLLNSP 240 SPSIISAHSV RHGILASAFH AFATRSIFNV YYRPWTRSSE FITPLDQYIK AVQFDYCFGT 300 RCRMRVEGGE SGEQRSLGTI IGTEDLDPIR WQNSKWRCVK VKWDPAASSV LLPERVCPWS 360 IDLTEFTKKK KTSTLHHQKR ARPNNASSPE FSSLLMDGMF HGTAKNQSQS SSGVLQGQED 420 SDTCVNQSSV LRQSLPHLLP QDPGCASMQQ QMHKQLQIQI PTCDTFYQCS SSTAHFSGRK 480 VPGLCNGLSA FSSNRVHDDA RATKNGTSLS RPNGSHRCMV FGVNLFNGSP ELPSPQVLTS 540 SEVQRLCSTP LTSQSSVSIA SKGISSKQCN NCCSIGDQTC TKVLKYGTNL GRSVDLYRFN 600 GYKGLILELD HMFDFNGKLI DGSSGWHITY TDEDGDMMLI GDPYPWQKFQ HEVRRMVIHP 660 KEEINRLNPS SPSSASY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-119 | 21 | 362 | 16 | 353 | Auxin response factor 1 |
4ldw_A | 1e-119 | 21 | 362 | 16 | 353 | Auxin response factor 1 |
4ldw_B | 1e-119 | 21 | 362 | 16 | 353 | Auxin response factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX589477 | 7e-58 | JX589477.1 Gossypium hirsutum clone NBRI_GE24193 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605141.1 | 0.0 | PREDICTED: auxin response factor 24-like isoform X1 | ||||
TrEMBL | A0A0B0Q080 | 0.0 | A0A0B0Q080_GOSAR; Auxin response factor | ||||
STRING | Gorai.004G085400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15797 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-134 | auxin response factor 2 |