PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22516_BGI-A2_v1.0 | ||||||||
Common Name | F383_08677 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 292aa MW: 33148.8 Da PI: 5.5234 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 75 | 123 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Cotton_A_22516_BGI-A2_v1.0 75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.775 | 74 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 74 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-38 | 74 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 74 | 132 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.40E-33 | 75 | 132 | No hit | No description |
PRINTS | PR00367 | 7.3E-12 | 75 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-12 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-12 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MCGGAIISEF IPRKGGRRVT AADIWPNSPF VKINGFCSNR DHSVCHFKRS QPEPPSSLVD 60 EQVEKKPKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK 120 IRGKKAKVNF PNEDDSFSTP YNLNRSTHNS SPCVYQQHIN SNYGFNYDLN EIGGYATDPI 180 VISGDENKGS DDQNVNLCYV PVKAEELEEE EKRREPMNKA VSAVGVQEEN NEVQKLSEEL 240 MAYENYMRFY QIPYLDGESP TQNGVAPQDS VVGELWSFDD DGVAVPETST AM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 75 | 131 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | KPKRQR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017624363.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like isoform X2 | ||||
TrEMBL | A0A0B0P9U4 | 0.0 | A0A0B0P9U4_GOSAR; Ethylene-responsive transcription factor RAP2-3-like protein | ||||
STRING | Gorai.004G142800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 8e-35 | ethylene-responsive element binding protein |