PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22289_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 443aa MW: 48760.5 Da PI: 6.5394 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.6 | 8e-37 | 78 | 197 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec 73 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+el+++ + ++ Cotton_A_22289_BGI-A2_v1.0 78 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAELppwnpldatisT----KKP 156 79**************************************************************988888754431....222 PP TCP 74 .eaesssssasnsssg...kaaksaa.kskksqksaasalnlak 112 ++e+ + s++++++ + aa ++++ ++++ nl++ Cotton_A_22289_BGI-A2_v1.0 157 nNQEDLNTSTATNNEFhieN---LAAgSGSQCVQQHELGDNLNN 197 23333333333333333321...222233444343333344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-33 | 78 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.187 | 80 | 138 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MESINGGAFW ESEQYLVSLW WEKYSQEEQI NFGAKSIEHA RKMGENHHQA AATSSRLRIK 60 HVGGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP 120 SKAVDWLIKK AKSAIDELAE LPPWNPLDAT ISTKKPNNQE DLNTSTATNN EFHIENLAAG 180 SGSQCVQQHE LGDNLNNNSG FLPASLVSDE IADTMKSFFP LGASSETPPS SSLQFQDYPP 240 DLLSRTSSHS QDLRLSLQSF PEPILLHHHE PHAAATVQAH HTDSALFSGT TPLAGFDGSN 300 AGWEHHQQQQ PAEIGRLQRF FAWNSSGGDA GGGNGGGFIF GTPSQQSLPL TFGQNSQFFS 360 QRGPLQSSNT PLVRAWIDQP IDEHHHHHQI PQNIHQQAAL SSMGFTTSGV YSGFRVPSRI 420 QGQEEEHDSI ANKLSSASSD SHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-21 | 85 | 138 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-21 | 85 | 138 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017607491.1 | 0.0 | PREDICTED: transcription factor TCP4-like isoform X2 | ||||
Swissprot | Q8LPR5 | 1e-111 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A1U8NJ23 | 0.0 | A0A1U8NJ23_GOSHI; transcription factor TCP4-like isoform X2 | ||||
STRING | Gorai.009G373000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-105 | TCP family protein |