PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22259_BGI-A2_v1.0 | ||||||||
Common Name | F383_23573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 837aa MW: 92182.6 Da PI: 6.0966 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Cotton_A_22259_BGI-A2_v1.0 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 179 | 2.7e-56 | 164 | 372 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+r++g+v +++ v+e+l+d++ W ++++++++++ Cotton_A_22259_BGI-A2_v1.0 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARVCGLVGLDPT-RVAEILKDRPSWYRDCRAVDVINM 245 789*******************************************************.8888888888************** PP ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS START 85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161 +s++ g+++l +++l+a+++l+p Rdf+ +Ry+ +++g++v++++S++++q+ p+ ++vRaellpSg+li+p+++g+ Cotton_A_22259_BGI-A2_v1.0 246 LSTAngGTIELLYMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppAVNFVRAELLPSGYLIRPCEGGG 328 ***999**************************************************999899********************* PP EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 s +++v+h+dl+ ++++++lr+l++s++ ++kt++a+l+++++ Cotton_A_22259_BGI-A2_v1.0 329 SIIHIVDHMDLEPWSVPEVLRPLYESSTLLAQKTTMAALRHLRQ 372 ***************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.872 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-16 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-17 | 20 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.62E-17 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-19 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.14E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 26.343 | 154 | 382 | IPR002913 | START domain |
CDD | cd08875 | 5.25E-80 | 158 | 373 | No hit | No description |
SMART | SM00234 | 1.1E-41 | 163 | 373 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-37 | 163 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.8E-24 | 163 | 369 | IPR023393 | START-like domain |
Pfam | PF01852 | 5.7E-54 | 164 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 1.0E-50 | 696 | 836 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 837 aa Download sequence Send to blast |
MMAATSACKE GTKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SHLVYENSYF 120 RQQTQNTTLA TTDTSCDSAV TSGQHHLTPQ HPPKDASPAG LLSIAEETLT EFLSKATGTA 180 VEWVQMPGMK PGPDSIGIVA ISHGCTGVAA RVCGLVGLDP TRVAEILKDR PSWYRDCRAV 240 DVINMLSTAN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VMEDGSLVVC ERSLNNTQNG 300 PSMPPAVNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ 360 KTTMAALRHL RQISQEISQP NVTGWGRRPA ALRALSHKLS KGFNEAVNGF TDEGWSMLES 420 DGIDDVTLLV NSSPGKMMDI NFSYSNGFPS MGNAVLCAKA SMLLQNVPPA ILLRFLREHR 480 SEWADSGIDA YSAAAVKAGP CSLPVPRGGS FGGQVILPLA HTIEHEEFME VVKLENVGHY 540 QDMIMPSDIF LLQLCTGVDE NAVSTCAELI FAPIDGSFSE DAPIIPCGFR IIPLDSGMDA 600 SSPNRTLDLA STLEVGAAGN RATGDKSSRG STKSVMTIAF QFVYEMQLQE NVAIMARQYV 660 RSIIASVQRV ALALSPSFFG SHAGLGSPPG THEAQTLARW ICQSYSCYMG DELLKHEGSE 720 SILKVLWHHT DAVLCCSLKA LPVFTFANQA GLDMLETTLV SLQDISLEKI FDENGRKTLF 780 AEFPQVMQQG FMCLQGGICL SSMGRPVSYE RAVAWKVVND EENAHCICFT FINWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643110.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like isoform X1 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A0B0MMB5 | 0.0 | A0A0B0MMB5_GOSAR; Homeobox-leucine zipper ATHB-8-like protein | ||||
STRING | Gorai.010G105900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |