PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22184_BGI-A2_v1.0 | ||||||||
Common Name | F383_16101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 26067.6 Da PI: 9.4098 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Cotton_A_22184_BGI-A2_v1.0 14 KGSWTREEDERLIAYIQAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.2 | 3.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++ + +lG++ W+ Ia +++ gRt++++k++w+++ Cotton_A_22184_BGI-A2_v1.0 67 RGNFTDEEDELIIKFHSLLGNK-WSIIAGRLP-GRTDNEIKNHWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.554 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.95E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.13E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.775 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-27 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.75E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGRSPCCEKG HTYKGSWTRE EDERLIAYIQ AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDVKRGNF TDEEDELIIK FHSLLGNKWS IIAGRLPGRT DNEIKNHWNT HIKRKLLSRG 120 IDPLTHRPVN EQAAIHTIDT VSSTAVLRED ERQTNQELNL ELQISPPSLH SHPPQVLRKR 180 NRKVICFYCS LGLRNSKECT CEGSSHSRSI QHVSFCTWRK AFQSEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459167 | 7e-71 | AJ459167.1 Gossypium hirsutum partial myb137 gene, clone pGhMYB137. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016676657.1 | 1e-168 | PREDICTED: myb-related protein 308-like | ||||
Refseq | XP_017628318.1 | 1e-168 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 2e-95 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0B0N7Y9 | 1e-167 | A0A0B0N7Y9_GOSAR; Myb-related protein | ||||
TrEMBL | A0A1U8IEZ7 | 1e-167 | A0A1U8IEZ7_GOSHI; myb-related protein 308-like | ||||
STRING | Gorai.007G192900.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-90 | myb domain protein 4 |
Publications ? help Back to Top | |||
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