PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22108_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 576aa    MW: 64454.5 Da    PI: 6.3603
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22108_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.6e-231562249
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                +i+++sn qvtfskRr g++KKA+EL++LC++e+a+i+fs+ +k++ +
  Cotton_A_22108_BGI-A2_v1.0 15 KIKDESNLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPGNKVFSF 62
                                69******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.754666IPR002100Transcription factor, MADS-box
SMARTSM004326.3E-33665IPR002100Transcription factor, MADS-box
CDDcd002651.51E-34780No hitNo description
SuperFamilySSF554552.09E-27779IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-18828IPR002100Transcription factor, MADS-box
PfamPF003194.0E-251562IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MVKKTLGRQK IEMAKIKDES NLQVTFSKRR SGLFKKASEL CTLCGVEIAI IVFSPGNKVF  60
SFGHPDVENI LNRYVHNTKD TSPTWQLIEA HRNAIILRLN AQLTEMMSQI EAQKKRGEEL  120
DKMRKASQEQ NWWESPIEEL SLPQLQFLRS AMAELKKIVQ REAEQLIIQN TNCQQLFPGS  180
SSQGTNTNSK QFFIGSSSQE MDTNRQQFFP GSSSQGMDTN PQQFFTGSSS QGMDTNPQHP  240
PQFFTPAQHP PQFFTRSSSQ GMDTNPFTGS SIQGMDTNLQ HPPQLFTGSS IQGMDTNPQL  300
FNEKSSQGMD TNPQHPPQFF TGSSIQGMDT NPQHFFTRSS SQGMDTNPQH PPQFFTGSSI  360
QGTDTNPQQF FTRSSIQRMD TNPQQLFPEK SSQGMDTNPQ QFFTESSIQG MDRNPRQLFP  420
EKSSQGMDTN PQRFFTGRSI QGMDTNPQQF FTRTSIQGMD RNPRQLFPEK SSQGMDTNPQ  480
QFFTGSSIQG MDRSPSLFFI GSSSQGGTPN YETMNNNMAF NANMMGGEYI DPNMIAPTPN  540
YNPNPPAEGH INPNPEGSDI LAPTSPTSPG FGRGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A4e-17697185MEF2 CHIMERA
6bz1_B4e-17697185MEF2 CHIMERA
6bz1_C4e-17697185MEF2 CHIMERA
6bz1_D4e-17697185MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647584.10.0PREDICTED: myocyte-specific enhancer factor 2A-like
TrEMBLA0A1U8LAB00.0A0A1U8LAB0_GOSHI; myocyte-specific enhancer factor 2A-like
STRINGGorai.002G213500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2474734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-62AGAMOUS-like 62