PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22103_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 488aa MW: 55094.4 Da PI: 5.0091

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22103_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	43.1	8.1e-14	227	266	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++s+Clk+YCeCfaag +C++ C Ce+C Nk + Cotton_A_22103_BGI-A2_v1.0 227 ACKHCNCRRSRCLKLYCECFAAGIYCEDCCACENCVNKPD 266 589**********************************975 PP
2	TCR	47	5.1e-15	313	352	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gC+Ck+skClkkYCeC+ a++ Cs+ C+Ce+C N+ Cotton_A_22103_BGI-A2_v1.0 313 RHKRGCKCKRSKCLKKYCECYRAKVGCSDGCHCENCDNSF 352 589***********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.3E-14	226	267	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	31.717	227	353	IPR005172	CRC domain
Pfam	PF03638	5.5E-10	229	264	IPR005172	CRC domain
SMART	SM01114	1.3E-14	313	354	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.9E-11	315	351	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MESYRNDIEA SPTTSPSEQV LTPCEKKSPV SEFLNDLSPI MPSRARASLY KQRLYETSFT 60 SNSSLFNSPH LNIHQRPINL NFLQRWCFFT ENIFRSQLIT LFITKDCFVY ANSDEIGASS 120 SNGCYQDDFM IKHSEYHTQH DEQCGACFNA SEVTIGKTSD NANDGVVEIS DDERLDKMLD 180 ISSKNIREHV ESDEFMEHVG QGLDSKLTFL GGNQAMDRKT SPDETEACKH CNCRRSRCLK 240 LYCECFAAGI YCEDCCACEN CVNKPDYEDI VLDIRHQIEL RNPLAFAPPI VNPSNDSPNV 300 TGDENLMNTP SARHKRGCKC KRSKCLKKYC ECYRAKVGCS DGCHCENCDN SFGKKSESMI 360 QRVEKQQNQS HEMLNTTQVM SDSTLVGITN PVSSIWEKLA DNNHLTISTH PYSRDMRDCQ 420 NVSQVESEKG TSFHCYSSAL SPKQPCQSKE IDDIYEIMAD GFPDYLMETS NPINTVNSGS 480 SLVLYNGE

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MESYRNDIEA SPTTSPSEQV LTPCEKKSPV SEFLNDLSPI MPSRARASLY KQRLYETSFT  60
SNSSLFNSPH LNIHQRPINL NFLQRWCFFT ENIFRSQLIT LFITKDCFVY ANSDEIGASS  120
SNGCYQDDFM IKHSEYHTQH DEQCGACFNA SEVTIGKTSD NANDGVVEIS DDERLDKMLD  180
ISSKNIREHV ESDEFMEHVG QGLDSKLTFL GGNQAMDRKT SPDETEACKH CNCRRSRCLK  240
LYCECFAAGI YCEDCCACEN CVNKPDYEDI VLDIRHQIEL RNPLAFAPPI VNPSNDSPNV  300
TGDENLMNTP SARHKRGCKC KRSKCLKKYC ECYRAKVGCS DGCHCENCDN SFGKKSESMI  360
QRVEKQQNQS HEMLNTTQVM SDSTLVGITN PVSSIWEKLA DNNHLTISTH PYSRDMRDCQ  420
NVSQVESEKG TSFHCYSSAL SPKQPCQSKE IDDIYEIMAD GFPDYLMETS NPINTVNSGS  480
SLVLYNGE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-13	229	350	12	120	Protein lin-54 homolog
5fd3_B	3e-13	229	350	12	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012483597.1	0.0	PREDICTED: uncharacterized protein LOC105798177 isoform X1
Refseq	XP_012483599.1	0.0	PREDICTED: uncharacterized protein LOC105798177 isoform X2
Refseq	XP_012483600.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 7 isoform X3
TrEMBL	A0A2P5YC79	0.0	A0A2P5YC79_GOSBA; Uncharacterized protein
STRING	EOY26555	4e-80	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15696	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-53	TESMIN/TSO1-like CXC 2