PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22076_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 370aa    MW: 40944.6 Da    PI: 4.5324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22076_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-194392255
                         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Cotton_A_22076_BGI-A2_v1.0 43 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 92
                                789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.16E-324299No hitNo description
SuperFamilySSF541713.4E-1943100IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-274399IPR001471AP2/ERF domain
PROSITE profilePS5103219.55943100IPR001471AP2/ERF domain
SMARTSM003801.6E-3543106IPR001471AP2/ERF domain
PfamPF008478.8E-144392IPR001471AP2/ERF domain
PRINTSPR003675.1E-84455IPR001471AP2/ERF domain
PRINTSPR003675.1E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGRKRKVVTD MATEDETMGW DEMVKQAAAA TASLGGIRRA RKRFVGVRQR PSGRWVAEIK  60
DTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PCSSSSMNST PALSSKISNR  120
LLQRIQAKNN SCFPLPTPSP PPVSVTVNAC VSQQPLLQQV EDDNNHGFLD VLEDFSISND  180
ELFNTKSVES CLTDNEDCSN SKRELDWSSP SNDDDLGDEG TLDFQFVDEI GFGPSYSCSP  240
FQLAEELESP TMAAEILADE HSMISYERKF SASLYAFNGI PELLKRKLGS EAAMAERRSE  300
QLSALRNACK NNNKRVKQDD LGTKQEERPQ SSFDSLSSMD MVEPSSSGNH DGESLWSSLD  360
LPPIIALLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-143699771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609225.10.0PREDICTED: uncharacterized protein LOC108455133
TrEMBLA0A2P5WIW00.0A0A2P5WIW0_GOSBA; Uncharacterized protein
STRINGGorai.006G013600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1827989
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-22related to AP2 11