PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_22025_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HSF

Protein Properties

Length: 335aa MW: 38904.9 Da PI: 6.3884

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_22025_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.2	1.5e-34	38	130	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 Fl k++++++d++++ ++sws+ g+sfvv+d++++++++Lp++Fkh+nf+SFvRQLn+YgF+k+++e+ weF+++ Cotton_A_22025_BGI-A2_v1.0 38 FLYKTFNMVDDPSTNCVVSWSRGGSSFVVWDTHSLSSNLLPRFFKHNNFSSFVRQLNTYGFRKIDSEK---------WEFENE 111 9**************************************************************998.........** PP XXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 85 sFkkgkkellekikrkkse 103 F kg+k+ll++ikr+k++ Cotton_A_22025_BGI-A2_v1.0 112 GFIKGQKHLLNSIKRRKNT 130 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.58E-32	33	127	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.1E-55	34	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	7.8E-36	34	127	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	9.9E-19	38	61	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-30	38	127	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.9E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	77	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.9E-19	89	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MNQYFPLKEE FHCSNYSQYE DETPQPMEGL NDSGPPPFLY KTFNMVDDPS TNCVVSWSRG 60 GSSFVVWDTH SLSSNLLPRF FKHNNFSSFV RQLNTYGFRK IDSEKWEFEN EGFIKGQKHL 120 LNSIKRRKNT SQTPVVIQQS LGFCVEDGEV DRLRRDRRVL MMELVKLRQQ QHNTRAYIKA 180 MERRLQGTEK KQQQMMCFLA SAMQNPAFLN QLIQQKEKRM ELEEAMCKKR RRLRPVSVVR 240 VGESSRSSGG GSNPVKTEVL EFGDYGYEVK VMEALALEMQ EGAGDKDENR ERQGKELDQG 300 FWEELLNERF EGGEDEDMNV NVLVDQLGYL GSTPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-23	29	127	17	129	Heat shock factor protein 1
5d5v_B	8e-23	29	127	17	129	Heat shock factor protein 1
5d5v_D	8e-23	29	127	17	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	156	RLRRDR
2	228	232	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612171.1	0.0	PREDICTED: heat stress transcription factor A-7a
Swissprot	Q338B0	1e-104	HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBL	A0A1U8NS09	1e-160	A0A1U8NS09_GOSHI; heat stress transcription factor A-7a-like
STRING	EOX94644	1e-159	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-83	heat shock transcription factor A6B

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Singh A, et al. OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.). Cell Stress Chaperones, 2012. 17(2): p. 243-54 [PMID:22147560]