PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21961_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 184aa    MW: 20897.7 Da    PI: 11.6408
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21961_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-211057249
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                 ++++  rqvtfskRr g++KKA+EL +LC+a+va+++fs+ gk y +
  Cotton_A_21961_BGI-A2_v1.0 10 MVKDSGSRQVTFSKRRSGLFKKANELATLCAAQVAIVVFSPGGKPYSF 57
                                5788999************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.492161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-28280IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-20323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MGRRKIEMKM VKDSGSRQVT FSKRRSGLFK KANELATLCA AQVAIVVFSP GGKPYSFGHP  60
SVEAVAERFL TLNLRSRVSI PRQLVAQPQR EAKVERLSRR LNAILKKLQA EMKRGEMLDE  120
AVKAARKRSK FRKPINELNL HELIEIRKAM GQLRERVKQR ISEIEASSSL LLLSKMATKQ  180
AESK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364500.0HM236450.1 Gossypium hirsutum MADS34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643169.11e-129PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A2P5XN161e-127A0A2P5XN16_GOSBA; Uncharacterized protein
STRINGGorai.010G165500.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-43AGAMOUS-like 29