PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21855_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 434aa    MW: 48658.5 Da    PI: 5.0765
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21855_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.91.3e-91444302374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl. 83 
                                 ++lLl+cA a++++d +laq++++ l++ as  gd++qRl+a f++AL +r +r +++ ++    s  +     + +++++l 
  Cotton_A_21855_BGI-A2_v1.0  44 EKLLLHCASALENNDVTLAQQVMWVLNNVASTVGDTNQRLTAWFLRALISRASRVCPTSMNFNGGSMFQ----RRLMTVTELv 122
                                 689***************************************************777777666555554....3333333445 PP

                        GRAS  84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetg 162
                                  ++++ P+++f++ + N aI +aveg  +vHi+Df+i+q++QWp+L++aLa+RpegppslRiT+ +   ++    + + ee+g
  Cotton_A_21855_BGI-A2_v1.0 123 gYVDLIPWHRFGFCASNGAIFKAVEGYGKVHILDFSITQCMQWPTLIDALAKRPEGPPSLRITVPSCRPQVpplLNVSKEEVG 205
                                 59*************************************************************9887555578889999**** PP

                        GRAS 163 erLakfAeelgvpfefnvl..............vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLkl 230
                                 +rLa+fA+  +vpfef+v                ++ l++l+ ++L+++ +Eal++n++  l +l des   +   rd++L++
  Cotton_A_21855_BGI-A2_v1.0 206 HRLANFAKFRDVPFEFHVKdddpclsnetfstqFESLLTQLTRSQLDLRYDEALVINCQNWLRYLSDESKGNTTtVRDAFLDV 288
                                 *****************88899998888866655556677799999********************9987666559******* PP

                        GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                                 +k+l+P+++vvv++++d++++s+  r++ +++y +  fd+l++ lp++s++r  +E   +g +i+n+v  eg++r+er e+  
  Cotton_A_21855_BGI-A2_v1.0 289 IKGLNPRIIVVVDEDCDLSASSLSSRITTCFNYLWIPFDALATFLPKDSRQRLEYESD-IGHKIENIVGFEGFQRTERLESGV 370
                                 **********************************************************.************************ PP

                        GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 k ++r+++aGF ++p+ e++ +++k+ll +++  g+ ++ e++ lvl+Wk+++ v+++aW+
  Cotton_A_21855_BGI-A2_v1.0 371 KLSQRMNDAGFVSLPFCEDTINEVKSLLDEHA-SGWGMKREEDMLVLTWKGHNSVFATAWT 430
                                 ********************************.889999999******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.72317411IPR005202Transcription factor GRAS
PfamPF035144.4E-8944430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKTEVRGNGG SISLQNPSLF NIPLDPITGA LKGCLGSLDG ACIEKLLLHC ASALENNDVT  60
LAQQVMWVLN NVASTVGDTN QRLTAWFLRA LISRASRVCP TSMNFNGGSM FQRRLMTVTE  120
LVGYVDLIPW HRFGFCASNG AIFKAVEGYG KVHILDFSIT QCMQWPTLID ALAKRPEGPP  180
SLRITVPSCR PQVPPLLNVS KEEVGHRLAN FAKFRDVPFE FHVKDDDPCL SNETFSTQFE  240
SLLTQLTRSQ LDLRYDEALV INCQNWLRYL SDESKGNTTT VRDAFLDVIK GLNPRIIVVV  300
DEDCDLSASS LSSRITTCFN YLWIPFDALA TFLPKDSRQR LEYESDIGHK IENIVGFEGF  360
QRTERLESGV KLSQRMNDAG FVSLPFCEDT INEVKSLLDE HASGWGMKRE EDMLVLTWKG  420
HNSVFATAWT ELED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-581642965472Protein SHORT-ROOT
5b3h_B4e-591642911418Protein SHORT-ROOT
5b3h_E4e-591642911418Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618376.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A1U8I9700.0A0A1U8I970_GOSHI; scarecrow-like protein 32
STRINGGorai.013G072100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17642910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-123GRAS family protein