PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21790_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 1038aa    MW: 116596 Da    PI: 7.897
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21790_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11345.2e-421622722118
                        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 
                                 l+e k+rwl+++ei+aiL n++ +++++++ + pksg+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LKvg  e +++
  Cotton_A_21790_BGI-A2_v1.0 162 LEEaKSRWLRPNEIHAILCNHRYFSIQAKPVNMPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKVGDKERIHV 244
                                 55669****************************************************************************** PP

                        CG-1  84 yYahseenptfqrrcywlLeeelekivlvhylevk 118
                                 yYah+e+n+tf rr+        e+ivlvhy+e+k
  Cotton_A_21790_BGI-A2_v1.0 245 YYAHGEDNSTFVRRSL-------EQIVLVHYRETK 272
                                 *************875.......689******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143759.11158277IPR005559CG-1 DNA-binding domain
SMARTSM010766.0E-63161272IPR005559CG-1 DNA-binding domain
PfamPF038591.4E-37164270IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.9E-12486571IPR014756Immunoglobulin E-set
SuperFamilySSF484031.87E-18647782IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.3E-18654784IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.369656793IPR020683Ankyrin repeat-containing domain
PfamPF127961.2E-8664751IPR020683Ankyrin repeat-containing domain
CDDcd002043.50E-16677781No hitNo description
SMARTSM002486.0E-6722751IPR002110Ankyrin repeat
PROSITE profilePS5008811.968722754IPR002110Ankyrin repeat
SMARTSM002481700761790IPR002110Ankyrin repeat
SMARTSM00015380832854IPR000048IQ motif, EF-hand binding site
SMARTSM00015280866888IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0026908930IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.237909933IPR000048IQ motif, EF-hand binding site
PfamPF006127.9E-4910930IPR000048IQ motif, EF-hand binding site
SMARTSM00015699881010IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.7859911017IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MDNKAIQWKA DVVAKNMLKG IATSFLAPRK WVCKKRKGSP FEETAGEEQQ QEVIPPHMAT  60
VAATSNPYSS SPPFPPTIVL PFAFSDALGK GPVQDDVNVL DLPYSHHYGA HGRDVVDETR  120
ILMSRQILRL ILSMEYGGCA GLVGAEIHGF HTLQDLDVKN MLEEAKSRWL RPNEIHAILC  180
NHRYFSIQAK PVNMPKSGTI VLFDRKMLRN FRKDGYNWKK KKDGKTIKEA HEHLKVGDKE  240
RIHVYYAHGE DNSTFVRRSL EQIVLVHYRE TKEVSLATHS NSSSLTDQST PLLVTEEFDS  300
GIANTYSEEP GESVNVRNHE MKLLEINTLE WDDLLVTNGA NDSIASRGDN VSCFDQQNQM  360
AVNGFSNYGG LISAHNLSTE TSLLVNSIAP VAQSNNAYLG TTGGVCNQIS GGQVNTTSQL  420
KDSCALGTGD SLDFLVNDGL QSQDSFGKWI NDFITEPLGS VGDSVLELSS SSANDSFTSP  480
EQIFSITEVS PEWAYSTEKT KILVIGVFHQ AYQHLAKSTL FCVCGDVCTP AEIVQVGVYR  540
CLLSQHSPGL ANLYMSLDGH KPISQVLGFE YCTPLSHDPI VPTEDESRRE EFHLQMRLAY  600
LLFSTSNSLD ILLGNKVSPN TLKGVKKFAQ KTSNMSDCWK YLMKSFEENR VSSTQAKDSL  660
LEIALKNRLR DWLLERIIEG GRTNEHDTRG QGVLHLCAIL GYTWAMYLYS WSGLSLDFRD  720
KHGWTALHWA AFYGREKMVA VLLSAGAKPN LVTDPTTRNP NGYTAADLAS LKGYEGLAAY  780
LSEEALVAHF NDMAVAGNAS GSLQTSRTEA TNFENLNEDE LYLKESLAAY RTAADAASRI  840
QTAFRVHSLK LRTKAIESSH PEDETRNIVA AMKIQHAFRN YGIKKKMTAA ARIQYSFLTW  900
KMRKDFLNMR RQAIKIQAVF RGFQVRRQYR KILWSVGVLE KAILRWRFKR KGLRGLQINK  960
AEEVAQRSQE SDTEEDFFRD GRKQAEERVV KAVVRVQTLF RSKKAQQEYR RMKLAHDIAK  1020
LEYENLLGLP SDMDACRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12736PRKWVCKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631889.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
RefseqXP_017631891.10.0PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A2P5Y2D20.0A0A2P5Y2D2_GOSBA; Uncharacterized protein
STRINGGorai.005G065700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]