PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21790_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 1038aa MW: 116596 Da PI: 7.897 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 134 | 5.2e-42 | 162 | 272 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 l+e k+rwl+++ei+aiL n++ +++++++ + pksg+++L++rk++r+frkDGy+wkkkkdgkt++E+he+LKvg e +++ Cotton_A_21790_BGI-A2_v1.0 162 LEEaKSRWLRPNEIHAILCNHRYFSIQAKPVNMPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTIKEAHEHLKVGDKERIHV 244 55669****************************************************************************** PP CG-1 84 yYahseenptfqrrcywlLeeelekivlvhylevk 118 yYah+e+n+tf rr+ e+ivlvhy+e+k Cotton_A_21790_BGI-A2_v1.0 245 YYAHGEDNSTFVRRSL-------EQIVLVHYRETK 272 *************875.......689******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 59.11 | 158 | 277 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.0E-63 | 161 | 272 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.4E-37 | 164 | 270 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 4.9E-12 | 486 | 571 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 1.87E-18 | 647 | 782 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.3E-18 | 654 | 784 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.369 | 656 | 793 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.2E-8 | 664 | 751 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.50E-16 | 677 | 781 | No hit | No description |
SMART | SM00248 | 6.0E-6 | 722 | 751 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.968 | 722 | 754 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1700 | 761 | 790 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 380 | 832 | 854 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 280 | 866 | 888 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0026 | 908 | 930 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.237 | 909 | 933 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.9E-4 | 910 | 930 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 69 | 988 | 1010 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.785 | 991 | 1017 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1038 aa Download sequence Send to blast |
MDNKAIQWKA DVVAKNMLKG IATSFLAPRK WVCKKRKGSP FEETAGEEQQ QEVIPPHMAT 60 VAATSNPYSS SPPFPPTIVL PFAFSDALGK GPVQDDVNVL DLPYSHHYGA HGRDVVDETR 120 ILMSRQILRL ILSMEYGGCA GLVGAEIHGF HTLQDLDVKN MLEEAKSRWL RPNEIHAILC 180 NHRYFSIQAK PVNMPKSGTI VLFDRKMLRN FRKDGYNWKK KKDGKTIKEA HEHLKVGDKE 240 RIHVYYAHGE DNSTFVRRSL EQIVLVHYRE TKEVSLATHS NSSSLTDQST PLLVTEEFDS 300 GIANTYSEEP GESVNVRNHE MKLLEINTLE WDDLLVTNGA NDSIASRGDN VSCFDQQNQM 360 AVNGFSNYGG LISAHNLSTE TSLLVNSIAP VAQSNNAYLG TTGGVCNQIS GGQVNTTSQL 420 KDSCALGTGD SLDFLVNDGL QSQDSFGKWI NDFITEPLGS VGDSVLELSS SSANDSFTSP 480 EQIFSITEVS PEWAYSTEKT KILVIGVFHQ AYQHLAKSTL FCVCGDVCTP AEIVQVGVYR 540 CLLSQHSPGL ANLYMSLDGH KPISQVLGFE YCTPLSHDPI VPTEDESRRE EFHLQMRLAY 600 LLFSTSNSLD ILLGNKVSPN TLKGVKKFAQ KTSNMSDCWK YLMKSFEENR VSSTQAKDSL 660 LEIALKNRLR DWLLERIIEG GRTNEHDTRG QGVLHLCAIL GYTWAMYLYS WSGLSLDFRD 720 KHGWTALHWA AFYGREKMVA VLLSAGAKPN LVTDPTTRNP NGYTAADLAS LKGYEGLAAY 780 LSEEALVAHF NDMAVAGNAS GSLQTSRTEA TNFENLNEDE LYLKESLAAY RTAADAASRI 840 QTAFRVHSLK LRTKAIESSH PEDETRNIVA AMKIQHAFRN YGIKKKMTAA ARIQYSFLTW 900 KMRKDFLNMR RQAIKIQAVF RGFQVRRQYR KILWSVGVLE KAILRWRFKR KGLRGLQINK 960 AEEVAQRSQE SDTEEDFFRD GRKQAEERVV KAVVRVQTLF RSKKAQQEYR RMKLAHDIAK 1020 LEYENLLGLP SDMDACRH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 36 | PRKWVCKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017631889.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Refseq | XP_017631891.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A2P5Y2D2 | 0.0 | A0A2P5Y2D2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G065700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4021 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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