PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21713_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 216aa    MW: 22532.4 Da    PI: 5.9397
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21713_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.6e-282104198
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++   +r+++++sl++eA  ra +Pv+Gavg
  Cotton_A_21713_BGI-A2_v1.0   2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPALFQSLLFEAVGRAINPVSGAVG 84 
                                 6**********************99********************************************************** PP

                      DUF260  79 vilklqqqleqlkaelallk 98 
                                 ++++++++++q++++++l++
  Cotton_A_21713_BGI-A2_v1.0  85 LLWTGNWNVCQSAVQTVLQG 104
                                 *************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6541107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR  60
PALFQSLLFE AVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS  120
DFEDVGETVG VGGGGGGGGP CIQSGGFVDI VKCKASDLNL CLMIGDDDRA VKRRRESTSS  180
EESETTTLGS RFSGDGNSSN VSGGADGERK LLRLFI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173RAVKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5817785e-87JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644932.11e-154PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN234e-60LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2P5XK531e-152A0A2P5XK53_GOSBA; Uncharacterized protein
STRINGGorai.005G232500.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.17e-62LOB domain-containing protein 38