PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21667_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 487aa    MW: 53584.2 Da    PI: 7.2231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21667_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.1e-063624001154
                                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Cotton_A_21667_BGI-A2_v1.0 362 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 400
                                 5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.354351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-9361415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-11361420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-7361405No hitNo description
SMARTSM003530.0084362406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MADEFNTGTN WWDSSRTAGS SSSSSGLNNS FGWATEMVDI KAARSPMDSV SSVSGSSVVF  60
HDNPKLQVGL GPDHHHHHHH HHHPPSDLQM MGLGLPSQAM DWNQALLRGD KSEVSFRSML  120
QDHNLNASNA NYQHQQQETG GIGSSQLHWR DKMFTGDAGL KQIGRGFSLD QSQFSPHGSS  180
SDSTVTCQSL PSSFQMDSST ALYGSPSTIL QGLLGSENQP QQQQQQSSYE NRSMNYQYGA  240
AAPTSYGMNT NDQLLPNALS KVPQFLRSSP PKQQLHGQLH FSNNAPFWNP SAAAAASMTD  300
HVRPGFFPSL QTQFQTGTFD EKPKNISEVR ETSTVVKKSG NEPASTKRPR NEAPSTMPAF  360
KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL HAQVSVLSTP YMKNEATIQH  420
PQQNPEKSKD PAEGPKQDLR SRGLCLVPVS STFPLTNESP VDFWTPTFGG TFRKIKTLDT  480
SCWRDDN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5834562e-76JX583456.1 Gossypium hirsutum clone NBRI_GE16500 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640722.10.0PREDICTED: transcription factor bHLH123-like isoform X2
SwissprotQ8GXT31e-89BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A1U8KJL40.0A0A1U8KJL4_GOSHI; transcription factor bHLH123-like isoform X4
STRINGGorai.002G079200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]