PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21639_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 137aa MW: 16257.2 Da PI: 9.3023 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.6 | 4.4e-08 | 50 | 81 | 25 | 56 |
--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRakek 56 +s++e +L+++lg + rq+ +WFq rRa +k Cotton_A_21639_BGI-A2_v1.0 50 VSRKEEMKLSRELGHQPRQIVIWFQCRRAEWK 81 5789999************************9 PP | |||||||
2 | HD-ZIP_I/II | 69.7 | 5.9e-23 | 52 | 118 | 26 | 92 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++ ++l+reLg qprq+ +WFq rRA +k+kqlE+ y++Lk+ yd +++e+++L++ev+ L++ l+ Cotton_A_21639_BGI-A2_v1.0 52 RKEEMKLSRELGHQPRQIVIWFQCRRAEWKAKQLERLYDTLKHDYDVISREKQKLQDEVNYLAQGLM 118 567899******************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 1.8E-5 | 50 | 81 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.37E-9 | 50 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.03E-5 | 51 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-9 | 51 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.718 | 51 | 83 | IPR001356 | Homeobox domain |
Pfam | PF02183 | 2.0E-7 | 83 | 114 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MDWNGTFASR PQPTLNSHYN YNYDKCPVKQ GQKSSYNAQE KTTTVYWRGV SRKEEMKLSR 60 ELGHQPRQIV IWFQCRRAEW KAKQLERLYD TLKHDYDVIS REKQKLQDEV NYLAQGLMDN 120 VQNPDSLSMH SSPNLNT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007027573.2 | 8e-36 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
TrEMBL | A0A2P5WQQ4 | 4e-93 | A0A2P5WQQ4_GOSBA; Uncharacterized protein | ||||
STRING | EOY08075 | 7e-36 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 9e-26 | homeobox 51 |