PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21616_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 382aa    MW: 42227.2 Da    PI: 5.0264
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21616_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.31.7e-121152344
                                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                                ien+s r+ ++ kRr+g+ KK  EL +LC++e  ++i+ ++ 
  Cotton_A_21616_BGI-A2_v1.0 11 IENSSARKASLRKRRQGLVKKVTELTTLCGVEGGIVIYTKNE 52
                                9************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.278151IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-14160IPR002100Transcription factor, MADS-box
CDDcd002663.16E-22285No hitNo description
PRINTSPR004046.0E-5323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-19494IPR002100Transcription factor, MADS-box
PfamPF003192.7E-131152IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MTGKKVKLAW IENSSARKAS LRKRRQGLVK KVTELTTLCG VEGGIVIYTK NEEEPIVWPS  60
REQMEQLLRR FNEIPEVERM KKSMNLETYY KEMISKSQDQ LRKETRKTKE MEVDQLMLQC  120
EQGKKLDDFS VNELDDIKWY METMRTDMGK LQEFYEKFPP PSVGPTQGDV PLPPPPPPPQ  180
GRAPAVGQTI GIADAGVGDK DTFEDFPWED PLNANTNTNY IRGEASRREM GLTYHDPFAA  240
ATGSSLGGAG SSSFRQPRPS HGGNSSIAPE PGLRRFSYRG SSSAAIEPRP PMAPFGYDSS  300
SSVGTANPEL PPFEPLSDDL LKGDSLGPFD NDMGPGHFPL GPLESSSPAS DFRGNPLRFF  360
GGESSSHGVE GNRETGQFDD KN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166190.0JX616619.1 Gossypium hirsutum clone NBRI_GE61410 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676189.10.0PREDICTED: uncharacterized protein LOC107895415
TrEMBLA0A1U8IJZ20.0A0A1U8IJZ2_GOSHI; uncharacterized protein LOC107895415
STRINGGorai.006G153400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16953311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-25AGAMOUS-like 48