PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21588_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 341aa    MW: 36882.2 Da    PI: 6.7207
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21588_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.8e-36851844108
                         TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                                  k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++      + + + +
  Cotton_A_21588_BGI-A2_v1.0  85 PKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsV----NGTLKIP 163
                                 5899**********************************************************9999955521....1111111 PP

                         TCP  86 ssgkaaksaakskksqksaasal 108
                                 +s+ +++ + ++k+++++++  +
  Cotton_A_21588_BGI-A2_v1.0 164 TSSGKQEGELPKKRRRRPSN--S 184
                                 11122222222222222222..2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-3089172IPR005333Transcription factor, TCP
PROSITE profilePS5136927.55989143IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MECNRNQTIE EIDESINNNT AVIINEERHQ SNNTTPTFSA SDATLMDPNQ PMKEEDLTDT  60
EPQELANPTL VQVVPAARTQ RSLAPKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL  120
GHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVNGTL KIPTSSGKQE GELPKKRRRR  180
PSNSEFIDVN EHQSSVSSGL APIAPMTCNS FNLNSQGLVP IWPMGTFGVL PAAPGSNQAQ  240
LWAIPATAPP FFNVTGRSIS SFVSAMQPEV QDSSVGSMGS SVLPTSSSGA TSVSNGNNSS  300
NHSTTQMLRE FSLEILDKRE LQFLGSPANQ QAPCSKPDHK H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173180PKKRRRRP
2174179KKRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5780912e-78JX578091.1 Gossypium hirsutum clone NBRI_GE10040 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616992.10.0PREDICTED: transcription factor TCP19-like
RefseqXP_017616993.10.0PREDICTED: transcription factor TCP19-like
SwissprotQ9LT891e-83TCP19_ARATH; Transcription factor TCP19
TrEMBLA0A1U8LS190.0A0A1U8LS19_GOSHI; transcription factor TCP19-like
STRINGGorai.006G197000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.28e-84TCP family protein