PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21586_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 221aa    MW: 23868.6 Da    PI: 4.2915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21586_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-1651100155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+ +l+g
  Cotton_A_21586_BGI-A2_v1.0  51 SSYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAAIALKG 100
                                 679***6..678*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1751109IPR016177DNA-binding domain
CDDcd000183.74E-2851109No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2652109IPR001471AP2/ERF domain
PROSITE profilePS5103219.86252108IPR001471AP2/ERF domain
SMARTSM003802.1E-2852116IPR001471AP2/ERF domain
PfamPF008472.3E-952100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MANLSPDENP PTPQIPDSTL YLVQLPNHSS LPSIPTPSPV QYSWPGSGRH SSYRGIRSRS  60
GKWVSEIREP RKTTRIWLGT YPTPEMAATA YDVAAIALKG PDTDLNFPDM ILSYPKVAST  120
SAAEIRAAAA SAAASRLPMP DTGSSKQDQG NLQNEGTAST FSTCMESGSG QEYIDEEELL  180
NFPNLMVDMA GGMLVTPPRI NSLASDDSPE ISDMESLWTY P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-13501081272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2243830.0DQ224383.1 Gossypium hirsutum DRE-binding protein 3b (DBP3b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619016.11e-161PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ905e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLQ076D71e-143Q076D7_GOSHI; DRE-binding protein 3b
STRINGGorai.006G197200.11e-137(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-42ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]