PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_21539_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 293aa    MW: 33055 Da    PI: 7.6213
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_21539_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-1373119555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Cotton_A_21539_BGI-A2_v1.0  73 HIWTERERRKKMRNMFSNLHALLPHL----PPKADKSTIVDEAVNYIKTLQ 119
                                 5667*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-1666131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.06268118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-1572133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1073119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-1273123No hitNo description
SMARTSM003535.6E-976124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MSEEGRHESF LLWEKNHQSR PLSISDNNNN SPGLGSEDKS ATHNNNQQQE DNSQAETKKK  60
KKGSESDDEH DMHIWTERER RKKMRNMFSN LHALLPHLPP KADKSTIVDE AVNYIKTLQQ  120
TLQNLEKKKL ERSIQGAINV GYHPSLAMNT QNQTLEYSSR EAFLADQVSS SSTDLANNNN  180
ATKISSSFSM STQSRPVTFE TWTSSNLVLN VCGNEAQKTV CSPKKPGLLA TIYYILKKHK  240
MEVVSAQVSS FCKHSMFMIQ ACANEASKQS VETFQVEDMF KQAVGEIMCW VSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633282.11e-166PREDICTED: transcription factor bHLH95-like
TrEMBLA0A2P5XAN00.0A0A2P5XAN0_GOSBA; Uncharacterized protein
STRINGVIT_03s0063g00170.t012e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50742549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-44bHLH family protein