PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_21526_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 286aa MW: 30773.1 Da PI: 5.4251

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_21526_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64	3.2e-20	118	167	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ ++g Cotton_A_21526_BGI-A2_v1.0 118 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 167 59*****.******82....48********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	2.08E-35	117	175	No hit	No description
SuperFamily	SSF54171	1.24E-22	118	176	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	9.9E-33	118	175	IPR001471	AP2/ERF domain
Pfam	PF00847	3.0E-14	118	167	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.211	118	175	IPR001471	AP2/ERF domain
SMART	SM00380	5.7E-38	118	181	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-12	119	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-12	141	157	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTSPPSPLRR LSPEQENSVI VSALKNVITG LVPSSSSSST VDVAVGFGLN FGTLTVAGGS 60 SSSSSASMVL KPSEVMEKCH VCEFDGCLGC NLFPPSQQED KNGATASNKS KTKRVKKNYR 120 GVRQRPWGKW AAEIRDPRRA ARVWLGTFNT AEEAARAYDK AAIDFRGPRA KLNFPFPDSY 180 SNDNVITSAP PPSAAASSTP TNTTTMTTTI VFSDQEINSV SLNALQQESD QQKNASFEMG 240 LGTEFWDGIS NDDEIQQWMM MTGFGADNNN NSSDSAMTST RNANSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-24	117	176	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633272.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109-like
Refseq	XP_017633274.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	4e-36	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A1U8LIY2	0.0	A0A1U8LIY2_GOSHI; ethylene-responsive transcription factor ERF109-like
STRING	Gorai.005G238000.1	1e-159	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5469	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	7e-31	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]