PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_21526_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 286aa MW: 30773.1 Da PI: 5.4251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 118 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r +r++lg+f taeeAa+a+++a+ ++g Cotton_A_21526_BGI-A2_v1.0 118 NYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFNTAEEAARAYDKAAIDFRG 167 59*******.**********82....48**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.08E-35 | 117 | 175 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-22 | 118 | 176 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.9E-33 | 118 | 175 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 118 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.211 | 118 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-38 | 118 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-12 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTSPPSPLRR LSPEQENSVI VSALKNVITG LVPSSSSSST VDVAVGFGLN FGTLTVAGGS 60 SSSSSASMVL KPSEVMEKCH VCEFDGCLGC NLFPPSQQED KNGATASNKS KTKRVKKNYR 120 GVRQRPWGKW AAEIRDPRRA ARVWLGTFNT AEEAARAYDK AAIDFRGPRA KLNFPFPDSY 180 SNDNVITSAP PPSAAASSTP TNTTTMTTTI VFSDQEINSV SLNALQQESD QQKNASFEMG 240 LGTEFWDGIS NDDEIQQWMM MTGFGADNNN NSSDSAMTST RNANSP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 117 | 176 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633272.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Refseq | XP_017633274.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 4e-36 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1U8LIY2 | 0.0 | A0A1U8LIY2_GOSHI; ethylene-responsive transcription factor ERF109-like | ||||
STRING | Gorai.005G238000.1 | 1e-159 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5469 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 7e-31 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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